miRNA display CGI


Results 1 - 20 of 283 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3660 3' -63.1 NC_001650.1 + 600 0.7 0.398642
Target:  5'- gGGGGCGaGGCcgGGCu---GCCGCCCUc -3'
miRNA:   3'- gCCCCGCgUCG--UCGuuguCGGCGGGG- -5'
3660 3' -63.1 NC_001650.1 + 812 0.74 0.231453
Target:  5'- gGGGGaggGCGGCAGC--CGGCCucGCCCCc -3'
miRNA:   3'- gCCCCg--CGUCGUCGuuGUCGG--CGGGG- -5'
3660 3' -63.1 NC_001650.1 + 845 0.67 0.596598
Target:  5'- cCGGGGU-CuGCcuGGCAACAGCCuaCCUc -3'
miRNA:   3'- -GCCCCGcGuCG--UCGUUGUCGGcgGGG- -5'
3660 3' -63.1 NC_001650.1 + 3139 0.66 0.654667
Target:  5'- aGGGGaGgGGCuGCuccauuaaugGACAGCC-CCCCu -3'
miRNA:   3'- gCCCCgCgUCGuCG----------UUGUCGGcGGGG- -5'
3660 3' -63.1 NC_001650.1 + 3607 0.67 0.558264
Target:  5'- aGGGGaaguuacCGGgGGUccuaaGAUGGCCGCCCCg -3'
miRNA:   3'- gCCCCgc-----GUCgUCG-----UUGUCGGCGGGG- -5'
3660 3' -63.1 NC_001650.1 + 7260 0.67 0.596598
Target:  5'- cCGaGGGUGCAGUgGGUAGCccccauugGGCCGCCg- -3'
miRNA:   3'- -GC-CCCGCGUCG-UCGUUG--------UCGGCGGgg -5'
3660 3' -63.1 NC_001650.1 + 8922 0.67 0.577361
Target:  5'- gGGGGaCGCAuGCA-CAACucaCCGCCCa -3'
miRNA:   3'- gCCCC-GCGU-CGUcGUUGuc-GGCGGGg -5'
3660 3' -63.1 NC_001650.1 + 14339 0.67 0.548782
Target:  5'- uGGGGUGCAGCGGguGguCAGggGUCCUg -3'
miRNA:   3'- gCCCCGCGUCGUCguU--GUCggCGGGG- -5'
3660 3' -63.1 NC_001650.1 + 14844 0.66 0.633365
Target:  5'- gCGGGGauuuccuguGCAGC--CGGCCGCCUCc -3'
miRNA:   3'- -GCCCCgcgu-----CGUCGuuGUCGGCGGGG- -5'
3660 3' -63.1 NC_001650.1 + 14868 0.68 0.511408
Target:  5'- aGGGGgGgAGagaGGC--CGGCCGCCCg -3'
miRNA:   3'- gCCCCgCgUCg--UCGuuGUCGGCGGGg -5'
3660 3' -63.1 NC_001650.1 + 15203 0.66 0.654667
Target:  5'- gCGGGGUugaGGCcGCAGCGGgCuCCCCc -3'
miRNA:   3'- -GCCCCGcg-UCGuCGUUGUCgGcGGGG- -5'
3660 3' -63.1 NC_001650.1 + 21382 0.67 0.589853
Target:  5'- gGGGGCGCGcgacuguGUAcuucuacgugcccacGUGGCAGCacgGCCCCg -3'
miRNA:   3'- gCCCCGCGU-------CGU---------------CGUUGUCGg--CGGGG- -5'
3660 3' -63.1 NC_001650.1 + 21748 0.67 0.596598
Target:  5'- cCGGGuccacCGCAGCcgcggcccucccAGCAGUAGCCcCCCCg -3'
miRNA:   3'- -GCCCc----GCGUCG------------UCGUUGUCGGcGGGG- -5'
3660 3' -63.1 NC_001650.1 + 21754 0.73 0.253606
Target:  5'- gGGGGCaGCAaCAGCuGCGG-CGCCCCc -3'
miRNA:   3'- gCCCCG-CGUcGUCGuUGUCgGCGGGG- -5'
3660 3' -63.1 NC_001650.1 + 21785 0.66 0.615929
Target:  5'- gGGGGaCGCcggGGagGGCGcCGGCCgagGCCCCg -3'
miRNA:   3'- gCCCC-GCG---UCg-UCGUuGUCGG---CGGGG- -5'
3660 3' -63.1 NC_001650.1 + 21905 0.66 0.621738
Target:  5'- gGGGGCGacgucccuggacaGGguGCAG-GGCCcCCCCg -3'
miRNA:   3'- gCCCCGCg------------UCguCGUUgUCGGcGGGG- -5'
3660 3' -63.1 NC_001650.1 + 21963 0.81 0.079295
Target:  5'- gGGGGCGCcGCAGCuguuGCUGCCCCc -3'
miRNA:   3'- gCCCCGCGuCGUCGuuguCGGCGGGG- -5'
3660 3' -63.1 NC_001650.1 + 22380 0.66 0.654667
Target:  5'- uCGGGGCGUAGagccuGCAcaGGuaGCCCa -3'
miRNA:   3'- -GCCCCGCGUCgu---CGUugUCggCGGGg -5'
3660 3' -63.1 NC_001650.1 + 22479 0.77 0.140163
Target:  5'- aCGGGaGCGCGGCgccgcccGGCAugGGCCccgccucgagGCCCCa -3'
miRNA:   3'- -GCCC-CGCGUCG-------UCGUugUCGG----------CGGGG- -5'
3660 3' -63.1 NC_001650.1 + 22646 0.69 0.440185
Target:  5'- gGGGGCGCGuacgccucGCA-CGACAGCgGCCg- -3'
miRNA:   3'- gCCCCGCGU--------CGUcGUUGUCGgCGGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.