miRNA display CGI


Results 1 - 20 of 283 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3660 3' -63.1 NC_001650.1 + 60781 0.74 0.236833
Target:  5'- aGGGGCGCggggguccugaGGCAGUAGUAGCCGUUCa -3'
miRNA:   3'- gCCCCGCG-----------UCGUCGUUGUCGGCGGGg -5'
3660 3' -63.1 NC_001650.1 + 116074 0.76 0.183146
Target:  5'- -aGGGUGUuaaacAGCAGC-GCGGCCGCCCUc -3'
miRNA:   3'- gcCCCGCG-----UCGUCGuUGUCGGCGGGG- -5'
3660 3' -63.1 NC_001650.1 + 52777 0.75 0.19662
Target:  5'- aGGGacuCGCGGCGGCGGCGGCCcucgggGCCCg -3'
miRNA:   3'- gCCCc--GCGUCGUCGUUGUCGG------CGGGg -5'
3660 3' -63.1 NC_001650.1 + 156213 0.75 0.206078
Target:  5'- aGGGccaucuccGCGCAGCAgGCGAuCAGCC-CCCCg -3'
miRNA:   3'- gCCC--------CGCGUCGU-CGUU-GUCGGcGGGG- -5'
3660 3' -63.1 NC_001650.1 + 76819 0.74 0.221
Target:  5'- aGGGGUGCAGCgucgcgagcgAGCGGauagGGCCGCCgCg -3'
miRNA:   3'- gCCCCGCGUCG----------UCGUUg---UCGGCGGgG- -5'
3660 3' -63.1 NC_001650.1 + 158369 0.74 0.226175
Target:  5'- cCGGGgucaGCGCGGUGGCGgguACcucuccccucugGGCCGCCCCu -3'
miRNA:   3'- -GCCC----CGCGUCGUCGU---UG------------UCGGCGGGG- -5'
3660 3' -63.1 NC_001650.1 + 110915 0.74 0.231453
Target:  5'- gGGGGCGagcaGGCcccGGC-ACAGCCGCUCUu -3'
miRNA:   3'- gCCCCGCg---UCG---UCGuUGUCGGCGGGG- -5'
3660 3' -63.1 NC_001650.1 + 45209 0.74 0.233593
Target:  5'- cCGGGGCGCGGUuccacgGGCucacccccaaagcCAGgCGCCCCa -3'
miRNA:   3'- -GCCCCGCGUCG------UCGuu-----------GUCgGCGGGG- -5'
3660 3' -63.1 NC_001650.1 + 58161 0.74 0.236833
Target:  5'- uGGGGgGUGGUGGCGAUGGCUGCCg- -3'
miRNA:   3'- gCCCCgCGUCGUCGUUGUCGGCGGgg -5'
3660 3' -63.1 NC_001650.1 + 45404 0.76 0.174622
Target:  5'- aGGGuGUGCAGCcGCAGCGuGCCGCCa- -3'
miRNA:   3'- gCCC-CGCGUCGuCGUUGU-CGGCGGgg -5'
3660 3' -63.1 NC_001650.1 + 58939 0.76 0.174205
Target:  5'- uGGGGCGCgggaggcccgggaGGCGGCGGCGGCUucuggcacggGCCCg -3'
miRNA:   3'- gCCCCGCG-------------UCGUCGUUGUCGG----------CGGGg -5'
3660 3' -63.1 NC_001650.1 + 110598 0.77 0.154469
Target:  5'- aGGGGCcgccccaGCAGCaacAGCAGCAGCgGaCCCCc -3'
miRNA:   3'- gCCCCG-------CGUCG---UCGUUGUCGgC-GGGG- -5'
3660 3' -63.1 NC_001650.1 + 110706 0.81 0.07712
Target:  5'- aGcGGGCaggccaggcugccGCAGCAGCAACAGCCucagcaGCCCCa -3'
miRNA:   3'- gC-CCCG-------------CGUCGUCGUUGUCGG------CGGGG- -5'
3660 3' -63.1 NC_001650.1 + 155751 0.81 0.0834
Target:  5'- aGGGGCucgguGCAGCcgGGCAggcacagcACGGCCGCCCCc -3'
miRNA:   3'- gCCCCG-----CGUCG--UCGU--------UGUCGGCGGGG- -5'
3660 3' -63.1 NC_001650.1 + 46514 0.8 0.096965
Target:  5'- uCGGGGC-CGGCGGCGAcCGGgCGCCCUg -3'
miRNA:   3'- -GCCCCGcGUCGUCGUU-GUCgGCGGGG- -5'
3660 3' -63.1 NC_001650.1 + 89217 0.79 0.101933
Target:  5'- aGGGcGgGCGGCGGCAACuGCUgGCCCCu -3'
miRNA:   3'- gCCC-CgCGUCGUCGUUGuCGG-CGGGG- -5'
3660 3' -63.1 NC_001650.1 + 46362 0.79 0.109837
Target:  5'- cCGGGGCGCGGCGccGCAuCGGCCGCggggcaCCa -3'
miRNA:   3'- -GCCCCGCGUCGU--CGUuGUCGGCGg-----GG- -5'
3660 3' -63.1 NC_001650.1 + 22479 0.77 0.140163
Target:  5'- aCGGGaGCGCGGCgccgcccGGCAugGGCCccgccucgagGCCCCa -3'
miRNA:   3'- -GCCC-CGCGUCG-------UCGUugUCGG----------CGGGG- -5'
3660 3' -63.1 NC_001650.1 + 78777 0.77 0.147516
Target:  5'- gGGGGCgGCAGCGGgGACGagaucGCCGCCgCg -3'
miRNA:   3'- gCCCCG-CGUCGUCgUUGU-----CGGCGGgG- -5'
3660 3' -63.1 NC_001650.1 + 51007 0.77 0.151139
Target:  5'- gGGGGCGCgGGC-GCGGCGGCC-CCCUc -3'
miRNA:   3'- gCCCCGCG-UCGuCGUUGUCGGcGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.