miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3663 5' -50.9 NC_001650.1 + 58165 0.66 0.998029
Target:  5'- --gGGugGUGgcgaUGGCUGCCgUggGAGGg -3'
miRNA:   3'- gcaCCugCACaa--AUCGAUGGgG--UUCC- -5'
3663 5' -50.9 NC_001650.1 + 56999 0.66 0.998029
Target:  5'- aGUGGaACGgccaGUaggcgcGCUACCCCcGGGa -3'
miRNA:   3'- gCACC-UGCa---CAaau---CGAUGGGGuUCC- -5'
3663 5' -50.9 NC_001650.1 + 80687 0.66 0.997657
Target:  5'- aCGUGGcCG-Gg--GGCUACacggaCCCGGGGa -3'
miRNA:   3'- -GCACCuGCaCaaaUCGAUG-----GGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 155901 0.66 0.997657
Target:  5'- ---cGAgGUGUccgUGGUggGCCCCGAGGa -3'
miRNA:   3'- gcacCUgCACAa--AUCGa-UGGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 101628 0.66 0.997657
Target:  5'- -cUGGGgGUGaugAGCUcguugGCCCUGAGGg -3'
miRNA:   3'- gcACCUgCACaaaUCGA-----UGGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 145376 0.66 0.997406
Target:  5'- gCGgGGACGgggguugcaggaggGgaaagggAGUUACCCCGGGGg -3'
miRNA:   3'- -GCaCCUGCa-------------Caaa----UCGAUGGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 44016 0.66 0.997227
Target:  5'- -aUGGACacGg--AGCUGCCCCuuGGGa -3'
miRNA:   3'- gcACCUGcaCaaaUCGAUGGGGu-UCC- -5'
3663 5' -50.9 NC_001650.1 + 111239 0.66 0.997227
Target:  5'- --aGGAgGcagau-GCUGCCCCAGGGc -3'
miRNA:   3'- gcaCCUgCacaaauCGAUGGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 31302 0.66 0.997227
Target:  5'- aCGgGGGCGcuucauGCgACCCCAGGGa -3'
miRNA:   3'- -GCaCCUGCacaaauCGaUGGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 141856 0.66 0.997134
Target:  5'- -cUGGGgGUGUUUuGCUucgcgcgggggcCCCCGAGGc -3'
miRNA:   3'- gcACCUgCACAAAuCGAu-----------GGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 146942 0.66 0.996734
Target:  5'- aCGUaGGCGaccgGg--GGCUgACCCCGAGGu -3'
miRNA:   3'- -GCAcCUGCa---CaaaUCGA-UGGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 81806 0.66 0.996734
Target:  5'- uGUGcGGCGaccucgcGUcgGGCgACCCCGAGGc -3'
miRNA:   3'- gCAC-CUGCa------CAaaUCGaUGGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 36087 0.66 0.996734
Target:  5'- gGUGGAgGUGUaccAG-UGCCCCucGGa -3'
miRNA:   3'- gCACCUgCACAaa-UCgAUGGGGuuCC- -5'
3663 5' -50.9 NC_001650.1 + 172345 0.66 0.996734
Target:  5'- aGUGGGCGgcccccUUAGac-CCCCGGGGc -3'
miRNA:   3'- gCACCUGCaca---AAUCgauGGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 5638 0.66 0.996734
Target:  5'- aGUGGGCGgcccccUUAGac-CCCCGGGGc -3'
miRNA:   3'- gCACCUGCaca---AAUCgauGGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 101682 0.66 0.996405
Target:  5'- --cGGACGUGagccccuuccuGCagaACCCCGAGGa -3'
miRNA:   3'- gcaCCUGCACaaau-------CGa--UGGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 157499 0.66 0.995986
Target:  5'- gCGgGGGCGgggagGUgcccccaggcgcaugGGCUacaGCCCCGAGGg -3'
miRNA:   3'- -GCaCCUGCa----CAaa-------------UCGA---UGGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 129935 0.66 0.995529
Target:  5'- --cGGACGUGUacgaGGCUguggcgggcacGCCCCugGAGGc -3'
miRNA:   3'- gcaCCUGCACAaa--UCGA-----------UGGGG--UUCC- -5'
3663 5' -50.9 NC_001650.1 + 94855 0.66 0.995529
Target:  5'- cCGUGGugGUGgucgAGgacCCCCAcGGg -3'
miRNA:   3'- -GCACCugCACaaa-UCgauGGGGUuCC- -5'
3663 5' -50.9 NC_001650.1 + 50704 0.66 0.995529
Target:  5'- gGUGGugGUaagugaaaguugGggUAGC-GCCCCGcgAGGa -3'
miRNA:   3'- gCACCugCA------------CaaAUCGaUGGGGU--UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.