miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3684 3' -55.8 NC_001650.1 + 110478 0.65 0.943917
Target:  5'- uGGAGGUGGagccggccaggcaAGAGGCCG-GAcccCCCGa -3'
miRNA:   3'- gUCUCUACCg------------UUUCCGGCgCUu--GGGC- -5'
3684 3' -55.8 NC_001650.1 + 87557 0.66 0.920397
Target:  5'- gCAGGGAaagcccaGGCccggaaaGGAGGCCGCGAuggGCaCCGu -3'
miRNA:   3'- -GUCUCUa------CCG-------UUUCCGGCGCU---UG-GGC- -5'
3684 3' -55.8 NC_001650.1 + 29691 0.66 0.941202
Target:  5'- -uGAGAaGGUGGAGGaCGCGGaguGCCUGg -3'
miRNA:   3'- guCUCUaCCGUUUCCgGCGCU---UGGGC- -5'
3684 3' -55.8 NC_001650.1 + 164740 0.66 0.931546
Target:  5'- -cGAGGaGGgGGAGGUCGCGcGCUCa -3'
miRNA:   3'- guCUCUaCCgUUUCCGGCGCuUGGGc -5'
3684 3' -55.8 NC_001650.1 + 165347 0.66 0.941202
Target:  5'- ---cGcgGGUugaaaGAAGGCgGCGAGCCCc -3'
miRNA:   3'- gucuCuaCCG-----UUUCCGgCGCUUGGGc -5'
3684 3' -55.8 NC_001650.1 + 169559 0.66 0.941202
Target:  5'- gAGGGggGGagAGAGGCCGgccGCCCGg -3'
miRNA:   3'- gUCUCuaCCg-UUUCCGGCgcuUGGGC- -5'
3684 3' -55.8 NC_001650.1 + 101163 0.66 0.926366
Target:  5'- aAGAGG-GGauugGAGGGCC-CGAACCUGu -3'
miRNA:   3'- gUCUCUaCCg---UUUCCGGcGCUUGGGC- -5'
3684 3' -55.8 NC_001650.1 + 50162 0.66 0.926366
Target:  5'- aGGAGGUcccugaagcugGGCcGGGGCuCGCGu-CCCGg -3'
miRNA:   3'- gUCUCUA-----------CCGuUUCCG-GCGCuuGGGC- -5'
3684 3' -55.8 NC_001650.1 + 121589 0.66 0.920952
Target:  5'- gCGGGGgcGGCGGAGGgCaGCGcccucggguGGCCCGu -3'
miRNA:   3'- -GUCUCuaCCGUUUCCgG-CGC---------UUGGGC- -5'
3684 3' -55.8 NC_001650.1 + 70368 0.66 0.93649
Target:  5'- -cGAGAUGGagcuGGCUGUgcuGGACCUGg -3'
miRNA:   3'- guCUCUACCguuuCCGGCG---CUUGGGC- -5'
3684 3' -55.8 NC_001650.1 + 10699 0.66 0.928466
Target:  5'- --uGGGUGGCAGGGGCCuuGGguaacuaucccagugGCCCa -3'
miRNA:   3'- gucUCUACCGUUUCCGGcgCU---------------UGGGc -5'
3684 3' -55.8 NC_001650.1 + 77947 0.66 0.920952
Target:  5'- gCGGGGgcGGCugcgaggcaccgAGGGGCCGuCGcGCCCa -3'
miRNA:   3'- -GUCUCuaCCG------------UUUCCGGC-GCuUGGGc -5'
3684 3' -55.8 NC_001650.1 + 129048 0.66 0.926366
Target:  5'- cCAuGGA-GGCGGuGGCCGCGcgcGACCCc -3'
miRNA:   3'- -GUcUCUaCCGUUuCCGGCGC---UUGGGc -5'
3684 3' -55.8 NC_001650.1 + 115865 0.66 0.93649
Target:  5'- uGGGcGGUGGCuGAGuGCCGUacaccGGGCCCa -3'
miRNA:   3'- gUCU-CUACCGuUUC-CGGCG-----CUUGGGc -5'
3684 3' -55.8 NC_001650.1 + 106846 0.66 0.920952
Target:  5'- gCAGGGGUgGGCGcuGGGGUCG--GGCCCGg -3'
miRNA:   3'- -GUCUCUA-CCGU--UUCCGGCgcUUGGGC- -5'
3684 3' -55.8 NC_001650.1 + 88401 0.66 0.933552
Target:  5'- aGGAGggGGUGGuGGCgGCGGggagggggaguacucACCCGa -3'
miRNA:   3'- gUCUCuaCCGUUuCCGgCGCU---------------UGGGC- -5'
3684 3' -55.8 NC_001650.1 + 29152 0.66 0.920952
Target:  5'- cCAGGGAcGGCAGgcaccuGGGCCugcucuGCGAcCCCu -3'
miRNA:   3'- -GUCUCUaCCGUU------UCCGG------CGCUuGGGc -5'
3684 3' -55.8 NC_001650.1 + 58956 0.66 0.920952
Target:  5'- gGGAGgcGGCGgcGGCUucuggcaCGGGCCCGg -3'
miRNA:   3'- gUCUCuaCCGUuuCCGGc------GCUUGGGC- -5'
3684 3' -55.8 NC_001650.1 + 142877 0.66 0.931546
Target:  5'- aCAGGGAaaUGGCcGccGCCGCcccGGCCCGu -3'
miRNA:   3'- -GUCUCU--ACCGuUucCGGCGc--UUGGGC- -5'
3684 3' -55.8 NC_001650.1 + 34452 0.66 0.923146
Target:  5'- -cGGGGUGGaGAGGGCggcccaggagccgggCGCGcACCCGg -3'
miRNA:   3'- guCUCUACCgUUUCCG---------------GCGCuUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.