miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3684 3' -55.8 NC_001650.1 + 91795 0.7 0.749287
Target:  5'- cCGGAGAccugcuucuUGaGCccuGGGCCGUGGACUCGg -3'
miRNA:   3'- -GUCUCU---------AC-CGuu-UCCGGCGCUUGGGC- -5'
3684 3' -55.8 NC_001650.1 + 145728 0.72 0.680369
Target:  5'- aGGAGGUGGC-AGGGCgGCaGGGCCa- -3'
miRNA:   3'- gUCUCUACCGuUUCCGgCG-CUUGGgc -5'
3684 3' -55.8 NC_001650.1 + 26795 0.71 0.700386
Target:  5'- aGGAGcgGGCcgGGGGaGCCGCGcGCCCc -3'
miRNA:   3'- gUCUCuaCCG--UUUC-CGGCGCuUGGGc -5'
3684 3' -55.8 NC_001650.1 + 77022 0.71 0.707343
Target:  5'- aCAGGGuggGGUucAGGCCGCgcugggccucggggGAGCCCGu -3'
miRNA:   3'- -GUCUCua-CCGuuUCCGGCG--------------CUUGGGC- -5'
3684 3' -55.8 NC_001650.1 + 122708 0.71 0.717226
Target:  5'- gGGAGGUGGCcucccuGGCCGCGGGaagcugcugcuucuCCCu -3'
miRNA:   3'- gUCUCUACCGuuu---CCGGCGCUU--------------GGGc -5'
3684 3' -55.8 NC_001650.1 + 142411 0.71 0.724103
Target:  5'- gGGGGGUcucuacgggcccgagGGCAucauGGCCGUGGACCUGc -3'
miRNA:   3'- gUCUCUA---------------CCGUuu--CCGGCGCUUGGGC- -5'
3684 3' -55.8 NC_001650.1 + 57888 0.7 0.738706
Target:  5'- uGGGGGUGGU--AGGgCGCGGgauaguaGCCCGg -3'
miRNA:   3'- gUCUCUACCGuuUCCgGCGCU-------UGGGC- -5'
3684 3' -55.8 NC_001650.1 + 25369 0.7 0.739673
Target:  5'- -cGAGggGGUuAAGaGCCGCG-ACCCGc -3'
miRNA:   3'- guCUCuaCCGuUUC-CGGCGCuUGGGC- -5'
3684 3' -55.8 NC_001650.1 + 68179 0.7 0.749287
Target:  5'- uGGAGAUGGUGGcgguGGCCGCcuuGAACCa- -3'
miRNA:   3'- gUCUCUACCGUUu---CCGGCG---CUUGGgc -5'
3684 3' -55.8 NC_001650.1 + 21520 0.72 0.650071
Target:  5'- cCGGGGG-GGCuacugcuggGAGGGCCGCGGcugcgguggACCCGg -3'
miRNA:   3'- -GUCUCUaCCG---------UUUCCGGCGCU---------UGGGC- -5'
3684 3' -55.8 NC_001650.1 + 77866 0.72 0.650071
Target:  5'- gCAGAgGGUGGaGAAGGCCGCGcugguCCUGg -3'
miRNA:   3'- -GUCU-CUACCgUUUCCGGCGCuu---GGGC- -5'
3684 3' -55.8 NC_001650.1 + 130070 0.72 0.638919
Target:  5'- aGGGGGUGGaGAGGGCCGgGGaggggggagagccGCCCGc -3'
miRNA:   3'- gUCUCUACCgUUUCCGGCgCU-------------UGGGC- -5'
3684 3' -55.8 NC_001650.1 + 130562 0.79 0.31512
Target:  5'- uCAGGGAgaagGGCAGGGGCCGUGGAgcUCCa -3'
miRNA:   3'- -GUCUCUa---CCGUUUCCGGCGCUU--GGGc -5'
3684 3' -55.8 NC_001650.1 + 69438 0.77 0.368151
Target:  5'- uCAGGGAgUGGCAGAacacGGCC-CGGGCCCGg -3'
miRNA:   3'- -GUCUCU-ACCGUUU----CCGGcGCUUGGGC- -5'
3684 3' -55.8 NC_001650.1 + 128177 0.77 0.398556
Target:  5'- gAGGGA-GGCGGuGGCCGCGAggaacgcggagaucGCCCGg -3'
miRNA:   3'- gUCUCUaCCGUUuCCGGCGCU--------------UGGGC- -5'
3684 3' -55.8 NC_001650.1 + 109123 0.77 0.409614
Target:  5'- gGGAGGUGGacGAGGCgGCGcACCCGg -3'
miRNA:   3'- gUCUCUACCguUUCCGgCGCuUGGGC- -5'
3684 3' -55.8 NC_001650.1 + 27903 0.75 0.510185
Target:  5'- aCGGGGGUGGCGGGGGCCuacaaCG-ACCUGg -3'
miRNA:   3'- -GUCUCUACCGUUUCCGGc----GCuUGGGC- -5'
3684 3' -55.8 NC_001650.1 + 130002 0.74 0.569217
Target:  5'- gAGGGcgGcGCGggacGAGGCCGCGGGCCUc -3'
miRNA:   3'- gUCUCuaC-CGU----UUCCGGCGCUUGGGc -5'
3684 3' -55.8 NC_001650.1 + 141942 0.73 0.598387
Target:  5'- gCAGGGG-GGCAAAcccccucGGCCGCGucuGCCCu -3'
miRNA:   3'- -GUCUCUaCCGUUU-------CCGGCGCu--UGGGc -5'
3684 3' -55.8 NC_001650.1 + 84980 0.73 0.599397
Target:  5'- aGGGcGAUGGCGggggcGAGGCCGagccgggcguCGGACCCGa -3'
miRNA:   3'- gUCU-CUACCGU-----UUCCGGC----------GCUUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.