miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3684 3' -55.8 NC_001650.1 + 111459 1.08 0.004335
Target:  5'- uCAGAGAUGGCAAAGGCCGCGAACCCGu -3'
miRNA:   3'- -GUCUCUACCGUUUCCGGCGCUUGGGC- -5'
3684 3' -55.8 NC_001650.1 + 19298 0.82 0.205794
Target:  5'- gAGAGAcUGGCGgcGGCCGCGGugggGCCCGg -3'
miRNA:   3'- gUCUCU-ACCGUuuCCGGCGCU----UGGGC- -5'
3684 3' -55.8 NC_001650.1 + 132890 0.79 0.294224
Target:  5'- gGGAGGUGGUGGAGGCgGUGGcGCCCGc -3'
miRNA:   3'- gUCUCUACCGUUUCCGgCGCU-UGGGC- -5'
3684 3' -55.8 NC_001650.1 + 130562 0.79 0.31512
Target:  5'- uCAGGGAgaagGGCAGGGGCCGUGGAgcUCCa -3'
miRNA:   3'- -GUCUCUa---CCGUUUCCGGCGCUU--GGGc -5'
3684 3' -55.8 NC_001650.1 + 69438 0.77 0.368151
Target:  5'- uCAGGGAgUGGCAGAacacGGCC-CGGGCCCGg -3'
miRNA:   3'- -GUCUCU-ACCGUUU----CCGGcGCUUGGGC- -5'
3684 3' -55.8 NC_001650.1 + 128177 0.77 0.398556
Target:  5'- gAGGGA-GGCGGuGGCCGCGAggaacgcggagaucGCCCGg -3'
miRNA:   3'- gUCUCUaCCGUUuCCGGCGCU--------------UGGGC- -5'
3684 3' -55.8 NC_001650.1 + 109123 0.77 0.409614
Target:  5'- gGGAGGUGGacGAGGCgGCGcACCCGg -3'
miRNA:   3'- gUCUCUACCguUUCCGgCGCuUGGGC- -5'
3684 3' -55.8 NC_001650.1 + 27903 0.75 0.510185
Target:  5'- aCGGGGGUGGCGGGGGCCuacaaCG-ACCUGg -3'
miRNA:   3'- -GUCUCUACCGUUUCCGGc----GCuUGGGC- -5'
3684 3' -55.8 NC_001650.1 + 86364 0.74 0.549304
Target:  5'- -cGAGggGGCAGcugguGGCCGUG-ACCCGg -3'
miRNA:   3'- guCUCuaCCGUUu----CCGGCGCuUGGGC- -5'
3684 3' -55.8 NC_001650.1 + 110719 0.74 0.569217
Target:  5'- --cAGGUGGCGAGcuGGCCGUGGcugagGCCCGg -3'
miRNA:   3'- gucUCUACCGUUU--CCGGCGCU-----UGGGC- -5'
3684 3' -55.8 NC_001650.1 + 130002 0.74 0.569217
Target:  5'- gAGGGcgGcGCGggacGAGGCCGCGGGCCUc -3'
miRNA:   3'- gUCUCuaC-CGU----UUCCGGCGCUUGGGc -5'
3684 3' -55.8 NC_001650.1 + 131391 0.74 0.569217
Target:  5'- cCAGGGcgGGCAGGGcGCCGaGAACgCCGc -3'
miRNA:   3'- -GUCUCuaCCGUUUC-CGGCgCUUG-GGC- -5'
3684 3' -55.8 NC_001650.1 + 141942 0.73 0.598387
Target:  5'- gCAGGGG-GGCAAAcccccucGGCCGCGucuGCCCu -3'
miRNA:   3'- -GUCUCUaCCGUUU-------CCGGCGCu--UGGGc -5'
3684 3' -55.8 NC_001650.1 + 84980 0.73 0.599397
Target:  5'- aGGGcGAUGGCGggggcGAGGCCGagccgggcguCGGACCCGa -3'
miRNA:   3'- gUCU-CUACCGU-----UUCCGGC----------GCUUGGGC- -5'
3684 3' -55.8 NC_001650.1 + 103861 0.73 0.619646
Target:  5'- uGGGGAUGGgGAAGGgccgccugggcuCCGCGAaggGCCCa -3'
miRNA:   3'- gUCUCUACCgUUUCC------------GGCGCU---UGGGc -5'
3684 3' -55.8 NC_001650.1 + 159125 0.73 0.623703
Target:  5'- aCGGGGAgggucucugugggauUGGCGGgguAGGCCaugGCGGGCCCGc -3'
miRNA:   3'- -GUCUCU---------------ACCGUU---UCCGG---CGCUUGGGC- -5'
3684 3' -55.8 NC_001650.1 + 51589 0.72 0.629789
Target:  5'- uGGGGAUGGgGGAGGCCGCcugcagguuggGGGCCa- -3'
miRNA:   3'- gUCUCUACCgUUUCCGGCG-----------CUUGGgc -5'
3684 3' -55.8 NC_001650.1 + 130070 0.72 0.638919
Target:  5'- aGGGGGUGGaGAGGGCCGgGGaggggggagagccGCCCGc -3'
miRNA:   3'- gUCUCUACCgUUUCCGGCgCU-------------UGGGC- -5'
3684 3' -55.8 NC_001650.1 + 77866 0.72 0.650071
Target:  5'- gCAGAgGGUGGaGAAGGCCGCGcugguCCUGg -3'
miRNA:   3'- -GUCU-CUACCgUUUCCGGCGCuu---GGGC- -5'
3684 3' -55.8 NC_001650.1 + 21520 0.72 0.650071
Target:  5'- cCGGGGG-GGCuacugcuggGAGGGCCGCGGcugcgguggACCCGg -3'
miRNA:   3'- -GUCUCUaCCG---------UUUCCGGCGCU---------UGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.