miRNA display CGI


Results 1 - 20 of 125 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3684 3' -55.8 NC_001650.1 + 2852 0.66 0.941202
Target:  5'- gAGGGggGGagAGAGGCCGgccGCCCGg -3'
miRNA:   3'- gUCUCuaCCg-UUUCCGGCgcuUGGGC- -5'
3684 3' -55.8 NC_001650.1 + 3979 0.69 0.813256
Target:  5'- cUAGGGGUGGCGccGGGGCggaGCucGCCCa -3'
miRNA:   3'- -GUCUCUACCGU--UUCCGg--CGcuUGGGc -5'
3684 3' -55.8 NC_001650.1 + 6140 0.67 0.890392
Target:  5'- aGGAGAUGGUgggaugggagGGAGGCUGU--GCCUGu -3'
miRNA:   3'- gUCUCUACCG----------UUUCCGGCGcuUGGGC- -5'
3684 3' -55.8 NC_001650.1 + 9288 0.67 0.90942
Target:  5'- gGGGGA-GGCAuuGGCCGguggaGGGCCUa -3'
miRNA:   3'- gUCUCUaCCGUuuCCGGCg----CUUGGGc -5'
3684 3' -55.8 NC_001650.1 + 10350 0.68 0.876586
Target:  5'- uGGuGAUGGUGAAGGCaaaGagGGGCCCa -3'
miRNA:   3'- gUCuCUACCGUUUCCGg--Cg-CUUGGGc -5'
3684 3' -55.8 NC_001650.1 + 10699 0.66 0.928466
Target:  5'- --uGGGUGGCAGGGGCCuuGGguaacuaucccagugGCCCa -3'
miRNA:   3'- gucUCUACCGUUUCCGGcgCU---------------UGGGc -5'
3684 3' -55.8 NC_001650.1 + 16900 0.67 0.903306
Target:  5'- uGGGGGcccgGGgGAGGGCgGC-AGCCCGg -3'
miRNA:   3'- gUCUCUa---CCgUUUCCGgCGcUUGGGC- -5'
3684 3' -55.8 NC_001650.1 + 19298 0.82 0.205794
Target:  5'- gAGAGAcUGGCGgcGGCCGCGGugggGCCCGg -3'
miRNA:   3'- gUCUCU-ACCGUuuCCGGCGCU----UGGGC- -5'
3684 3' -55.8 NC_001650.1 + 19548 0.68 0.861923
Target:  5'- uCGGGGG-GGUuGAGcGCCGCGGucccaccgggaGCCCGg -3'
miRNA:   3'- -GUCUCUaCCGuUUC-CGGCGCU-----------UGGGC- -5'
3684 3' -55.8 NC_001650.1 + 21520 0.72 0.650071
Target:  5'- cCGGGGG-GGCuacugcuggGAGGGCCGCGGcugcgguggACCCGg -3'
miRNA:   3'- -GUCUCUaCCG---------UUUCCGGCGCU---------UGGGC- -5'
3684 3' -55.8 NC_001650.1 + 21793 0.69 0.804535
Target:  5'- cCGGGGAgGGCGccGGCCGaGGcCCCGg -3'
miRNA:   3'- -GUCUCUaCCGUuuCCGGCgCUuGGGC- -5'
3684 3' -55.8 NC_001650.1 + 22362 0.68 0.86936
Target:  5'- uGGGGGUGGU--GGGCaGCGGggaggACCCGu -3'
miRNA:   3'- gUCUCUACCGuuUCCGgCGCU-----UGGGC- -5'
3684 3' -55.8 NC_001650.1 + 24346 0.68 0.861923
Target:  5'- aGGAGGUGGgGGAGGC-GUGGAgguCCCa -3'
miRNA:   3'- gUCUCUACCgUUUCCGgCGCUU---GGGc -5'
3684 3' -55.8 NC_001650.1 + 25369 0.7 0.739673
Target:  5'- -cGAGggGGUuAAGaGCCGCG-ACCCGc -3'
miRNA:   3'- guCUCuaCCGuUUC-CGGCGCuUGGGC- -5'
3684 3' -55.8 NC_001650.1 + 26444 0.7 0.777486
Target:  5'- aGGAGAacgugGGCAcccAGGCCagcGUGGGCCCGu -3'
miRNA:   3'- gUCUCUa----CCGUu--UCCGG---CGCUUGGGC- -5'
3684 3' -55.8 NC_001650.1 + 26795 0.71 0.700386
Target:  5'- aGGAGcgGGCcgGGGGaGCCGCGcGCCCc -3'
miRNA:   3'- gUCUCuaCCG--UUUC-CGGCGCuUGGGc -5'
3684 3' -55.8 NC_001650.1 + 26807 0.7 0.746413
Target:  5'- cCAGGGcaggcagGGCuaccaguuccugcaGAAGGCCGCGGGCCUc -3'
miRNA:   3'- -GUCUCua-----CCG--------------UUUCCGGCGCUUGGGc -5'
3684 3' -55.8 NC_001650.1 + 27903 0.75 0.510185
Target:  5'- aCGGGGGUGGCGGGGGCCuacaaCG-ACCUGg -3'
miRNA:   3'- -GUCUCUACCGUUUCCGGc----GCuUGGGC- -5'
3684 3' -55.8 NC_001650.1 + 28018 0.72 0.670297
Target:  5'- gCGGAGAUGGCccuGGCCGgGcagugcgggguGACCCu -3'
miRNA:   3'- -GUCUCUACCGuuuCCGGCgC-----------UUGGGc -5'
3684 3' -55.8 NC_001650.1 + 28118 0.67 0.886343
Target:  5'- uGGAGGugccccugggcaaccUGGCcgggguccucGAGGCCuGCGAGCCCu -3'
miRNA:   3'- gUCUCU---------------ACCGu---------UUCCGG-CGCUUGGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.