miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3686 3' -56 NC_001650.1 + 183378 0.66 0.938834
Target:  5'- ---gGCuGUUGCCAGGcagaccccGGGGGGguGCg -3'
miRNA:   3'- guugUGcUAGCGGUCU--------CCUCCCguCG- -5'
3686 3' -56 NC_001650.1 + 16671 0.66 0.938834
Target:  5'- ---gGCuGUUGCCAGGcagaccccGGGGGGguGCg -3'
miRNA:   3'- guugUGcUAGCGGUCU--------CCUCCCguCG- -5'
3686 3' -56 NC_001650.1 + 125882 0.66 0.938834
Target:  5'- cCAGCACaGcUCGCacaaagGGAGGAGGGggugAGCg -3'
miRNA:   3'- -GUUGUG-CuAGCGg-----UCUCCUCCCg---UCG- -5'
3686 3' -56 NC_001650.1 + 159110 0.66 0.938834
Target:  5'- gAGCA-GAUCccgGCCAcGGGGAGGGUcucugugggauuGGCg -3'
miRNA:   3'- gUUGUgCUAG---CGGU-CUCCUCCCG------------UCG- -5'
3686 3' -56 NC_001650.1 + 3292 0.66 0.938834
Target:  5'- uGGC-CGGUagggGCCAcgugguGAGGAGcGGCGGCc -3'
miRNA:   3'- gUUGuGCUAg---CGGU------CUCCUC-CCGUCG- -5'
3686 3' -56 NC_001650.1 + 169999 0.66 0.938834
Target:  5'- uGGC-CGGUagggGCCAcgugguGAGGAGcGGCGGCc -3'
miRNA:   3'- gUUGuGCUAg---CGGU------CUCCUC-CCGUCG- -5'
3686 3' -56 NC_001650.1 + 66924 0.66 0.938834
Target:  5'- gAGCAUGGg-GCCGGGgcgcGGAuGGCGGCg -3'
miRNA:   3'- gUUGUGCUagCGGUCU----CCUcCCGUCG- -5'
3686 3' -56 NC_001650.1 + 51264 0.66 0.938362
Target:  5'- gAGCGCGGaccaccggagggcUCGCgccgCGGGGGGacccucGGGCGGCu -3'
miRNA:   3'- gUUGUGCU-------------AGCG----GUCUCCU------CCCGUCG- -5'
3686 3' -56 NC_001650.1 + 73536 0.66 0.938362
Target:  5'- -cGCugGGucccgguccggcaUCGCCcGAGGGGGcGCGuGCg -3'
miRNA:   3'- guUGugCU-------------AGCGGuCUCCUCC-CGU-CG- -5'
3686 3' -56 NC_001650.1 + 135280 0.66 0.937413
Target:  5'- -uGCACGggCaccUCAGAGGuguugaccaccgucAGGGCGGCg -3'
miRNA:   3'- guUGUGCuaGc--GGUCUCC--------------UCCCGUCG- -5'
3686 3' -56 NC_001650.1 + 81967 0.66 0.937413
Target:  5'- gCAGCACcugCGCCGGcugcgccgucugguGGGA-GGCGGCu -3'
miRNA:   3'- -GUUGUGcuaGCGGUC--------------UCCUcCCGUCG- -5'
3686 3' -56 NC_001650.1 + 65951 0.66 0.934015
Target:  5'- uGGCACGAgcaGaUAGAGGAGuuccuGGCGGCc -3'
miRNA:   3'- gUUGUGCUag-CgGUCUCCUC-----CCGUCG- -5'
3686 3' -56 NC_001650.1 + 162175 0.66 0.934015
Target:  5'- gAGCGCGucCGCCuuGGGGuGGGCcagGGCc -3'
miRNA:   3'- gUUGUGCuaGCGGu-CUCCuCCCG---UCG- -5'
3686 3' -56 NC_001650.1 + 161540 0.66 0.934015
Target:  5'- ---gACGGcCGCCAGGauGGAGGcCAGCc -3'
miRNA:   3'- guugUGCUaGCGGUCU--CCUCCcGUCG- -5'
3686 3' -56 NC_001650.1 + 29374 0.66 0.934015
Target:  5'- aGGCGCag-CGuCCAGGGGGcGGCGGUg -3'
miRNA:   3'- gUUGUGcuaGC-GGUCUCCUcCCGUCG- -5'
3686 3' -56 NC_001650.1 + 81603 0.66 0.934015
Target:  5'- cCGACGCGAggUCGCCGcacAGGGcgcgcgccgcgcGGGcCAGCu -3'
miRNA:   3'- -GUUGUGCU--AGCGGUc--UCCU------------CCC-GUCG- -5'
3686 3' -56 NC_001650.1 + 48113 0.66 0.932022
Target:  5'- aCAGCAgGAUgGCCAGGGGGuccaugacccccGCGGCc -3'
miRNA:   3'- -GUUGUgCUAgCGGUCUCCUcc----------CGUCG- -5'
3686 3' -56 NC_001650.1 + 131590 0.66 0.928962
Target:  5'- uGGCGCGAggUGCC-GAGGAcccccGGGcCAGUg -3'
miRNA:   3'- gUUGUGCUa-GCGGuCUCCU-----CCC-GUCG- -5'
3686 3' -56 NC_001650.1 + 142630 0.66 0.928962
Target:  5'- gCAGCA-GGcCGgCGGAGGGGGcuGCGGCu -3'
miRNA:   3'- -GUUGUgCUaGCgGUCUCCUCC--CGUCG- -5'
3686 3' -56 NC_001650.1 + 79985 0.66 0.928444
Target:  5'- aGACAUccagaucacaguaGGUCGCUauggcuagcGGGGGAGuaGGCGGCa -3'
miRNA:   3'- gUUGUG-------------CUAGCGG---------UCUCCUC--CCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.