miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3686 5' -62.6 NC_001650.1 + 130967 0.66 0.686191
Target:  5'- gGACucccagaGGCCCgUCUUcgagGCGGCGCcccugUCGCg -3'
miRNA:   3'- gCUG-------UCGGGgAGAG----CGCCGCG-----AGCGa -5'
3686 5' -62.6 NC_001650.1 + 138173 0.66 0.667951
Target:  5'- aGGCGGCCCUgagCUCGUGGaGCaUGUg -3'
miRNA:   3'- gCUGUCGGGGa--GAGCGCCgCGaGCGa -5'
3686 5' -62.6 NC_001650.1 + 29348 0.66 0.664098
Target:  5'- uGAC-GCCCCUCUCGgaccaccugcucaGGCGCagCGUc -3'
miRNA:   3'- gCUGuCGGGGAGAGCg------------CCGCGa-GCGa -5'
3686 5' -62.6 NC_001650.1 + 71754 0.66 0.658311
Target:  5'- gCGGCGuGCCUCUCccaCGUGGUGgaCGCg -3'
miRNA:   3'- -GCUGU-CGGGGAGa--GCGCCGCgaGCGa -5'
3686 5' -62.6 NC_001650.1 + 143004 0.66 0.658311
Target:  5'- -----uCCCCUCUCGCGaauGCGC-CGCUg -3'
miRNA:   3'- gcugucGGGGAGAGCGC---CGCGaGCGA- -5'
3686 5' -62.6 NC_001650.1 + 57750 0.66 0.648651
Target:  5'- uCGACGGaCCCCcgUCccccaCGCGcGCGCUCGg- -3'
miRNA:   3'- -GCUGUC-GGGG--AGa----GCGC-CGCGAGCga -5'
3686 5' -62.6 NC_001650.1 + 61917 0.67 0.629304
Target:  5'- gCGGCGGCCagCUgCUCGCG-CGC-CGCg -3'
miRNA:   3'- -GCUGUCGGg-GA-GAGCGCcGCGaGCGa -5'
3686 5' -62.6 NC_001650.1 + 51073 0.67 0.629304
Target:  5'- gGGCGGuacuuCCCC-CUCGCcGCGCUCGg- -3'
miRNA:   3'- gCUGUC-----GGGGaGAGCGcCGCGAGCga -5'
3686 5' -62.6 NC_001650.1 + 90165 0.67 0.590684
Target:  5'- aCGcuCAGCUgCgUCUCgGCGGCGCUgGCg -3'
miRNA:   3'- -GCu-GUCGGgG-AGAG-CGCCGCGAgCGa -5'
3686 5' -62.6 NC_001650.1 + 157555 0.67 0.581081
Target:  5'- aGACAGCgCCUCcUGUGGCaGCUUGg- -3'
miRNA:   3'- gCUGUCGgGGAGaGCGCCG-CGAGCga -5'
3686 5' -62.6 NC_001650.1 + 92708 0.68 0.571511
Target:  5'- gGACAGCgCCCUCUUGUagaGGUGCacgaagaGCUg -3'
miRNA:   3'- gCUGUCG-GGGAGAGCG---CCGCGag-----CGA- -5'
3686 5' -62.6 NC_001650.1 + 114485 0.68 0.552491
Target:  5'- gGACAgGUCUCUCUCGaGGUGCaCGCUu -3'
miRNA:   3'- gCUGU-CGGGGAGAGCgCCGCGaGCGA- -5'
3686 5' -62.6 NC_001650.1 + 147194 0.68 0.543052
Target:  5'- uGACGGCCUCgUCcgagacCGUGGCcaGCUCGCg -3'
miRNA:   3'- gCUGUCGGGG-AGa-----GCGCCG--CGAGCGa -5'
3686 5' -62.6 NC_001650.1 + 107387 0.68 0.543052
Target:  5'- gCGGCGGCCCUcaUC-CGCu-CGCUCGCg -3'
miRNA:   3'- -GCUGUCGGGG--AGaGCGccGCGAGCGa -5'
3686 5' -62.6 NC_001650.1 + 66812 0.68 0.543052
Target:  5'- uCGcCAGCUCCUCgucCGCGG-GCUCGa- -3'
miRNA:   3'- -GCuGUCGGGGAGa--GCGCCgCGAGCga -5'
3686 5' -62.6 NC_001650.1 + 73126 0.68 0.533666
Target:  5'- gCGACcGCCgCC-CUCGCgccuGGCGC-CGCUg -3'
miRNA:   3'- -GCUGuCGG-GGaGAGCG----CCGCGaGCGA- -5'
3686 5' -62.6 NC_001650.1 + 73637 0.69 0.505877
Target:  5'- gGGCGGCCCCUgUUCGCGuuGCUgaggcUGCUg -3'
miRNA:   3'- gCUGUCGGGGA-GAGCGCcgCGA-----GCGA- -5'
3686 5' -62.6 NC_001650.1 + 67531 0.69 0.4877
Target:  5'- gCGACGgauGCCCCgagcgggcgggCUCGCGcGCGCUCuCUa -3'
miRNA:   3'- -GCUGU---CGGGGa----------GAGCGC-CGCGAGcGA- -5'
3686 5' -62.6 NC_001650.1 + 117361 0.69 0.469835
Target:  5'- --cCGGCgCCUCcCGCGGCGCcCGCc -3'
miRNA:   3'- gcuGUCGgGGAGaGCGCCGCGaGCGa -5'
3686 5' -62.6 NC_001650.1 + 73201 0.69 0.46103
Target:  5'- gGACucccuGUCCCUCUCGCGaCcCUCGCg -3'
miRNA:   3'- gCUGu----CGGGGAGAGCGCcGcGAGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.