miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3703 5' -55.6 NC_001650.1 + 63301 0.66 0.939857
Target:  5'- cUUGGCCAGCgcGCgCAGCUCgcg-GCg -3'
miRNA:   3'- cGACCGGUUGa-CG-GUCGAGaagaCGg -5'
3703 5' -55.6 NC_001650.1 + 58249 0.66 0.939857
Target:  5'- cGCUGGCCuuuaaauAC-GUCGGCgcuuugaCUUCcGCCa -3'
miRNA:   3'- -CGACCGGu------UGaCGGUCGa------GAAGaCGG- -5'
3703 5' -55.6 NC_001650.1 + 142713 0.66 0.935029
Target:  5'- uGUUGGgaa---GCCAGCUUUUUUGCCa -3'
miRNA:   3'- -CGACCgguugaCGGUCGAGAAGACGG- -5'
3703 5' -55.6 NC_001650.1 + 85386 0.66 0.935029
Target:  5'- uGCUGaCCucCUGCCuGCaCUUUUGCUg -3'
miRNA:   3'- -CGACcGGuuGACGGuCGaGAAGACGG- -5'
3703 5' -55.6 NC_001650.1 + 130527 0.66 0.935029
Target:  5'- aUUGGUCGAgaGCCGGCUggccCUcUCgGCCa -3'
miRNA:   3'- cGACCGGUUgaCGGUCGA----GA-AGaCGG- -5'
3703 5' -55.6 NC_001650.1 + 61910 0.66 0.935029
Target:  5'- gGC-GGCCGcgGCgGCCAGCUgcUCgcgcGCCg -3'
miRNA:   3'- -CGaCCGGU--UGaCGGUCGAgaAGa---CGG- -5'
3703 5' -55.6 NC_001650.1 + 65525 0.66 0.935029
Target:  5'- gGC-GGCCuucuucacCUGCCAGUgCUUC-GCCu -3'
miRNA:   3'- -CGaCCGGuu------GACGGUCGaGAAGaCGG- -5'
3703 5' -55.6 NC_001650.1 + 152278 0.66 0.935029
Target:  5'- cGgUGGCCGAgaGCagcgagaGGCUUUUCUcCCa -3'
miRNA:   3'- -CgACCGGUUgaCGg------UCGAGAAGAcGG- -5'
3703 5' -55.6 NC_001650.1 + 59236 0.66 0.935029
Target:  5'- cCUGGCCAACUGCgccugcaGGgaCgaCUGCg -3'
miRNA:   3'- cGACCGGUUGACGg------UCgaGaaGACGg -5'
3703 5' -55.6 NC_001650.1 + 56572 0.66 0.929963
Target:  5'- cGCgagGGCCAACUcagcGCCcgAGCUCcaggCgaaGCCa -3'
miRNA:   3'- -CGa--CCGGUUGA----CGG--UCGAGaa--Ga--CGG- -5'
3703 5' -55.6 NC_001650.1 + 65977 0.66 0.929963
Target:  5'- gGC-GGCCaAGCUGCCcgagaaccccgAGCg---CUGCCa -3'
miRNA:   3'- -CGaCCGG-UUGACGG-----------UCGagaaGACGG- -5'
3703 5' -55.6 NC_001650.1 + 33850 0.66 0.929443
Target:  5'- uGCUGGCCAGCUGggucCCAggaacgagauuguGCuguccaccUCUcagguggaggUCUGCCa -3'
miRNA:   3'- -CGACCGGUUGAC----GGU-------------CG--------AGA----------AGACGG- -5'
3703 5' -55.6 NC_001650.1 + 114422 0.66 0.924656
Target:  5'- cGCggcGGCgGGCuuUGCCuuGGCgggCUUCUGCUu -3'
miRNA:   3'- -CGa--CCGgUUG--ACGG--UCGa--GAAGACGG- -5'
3703 5' -55.6 NC_001650.1 + 49195 0.66 0.913325
Target:  5'- cGCUGGCCGAggGCgAGCUgcgcCUggUGCUc -3'
miRNA:   3'- -CGACCGGUUgaCGgUCGA----GAagACGG- -5'
3703 5' -55.6 NC_001650.1 + 36967 0.66 0.913325
Target:  5'- uGCUGGCCAcGCUGCUgaacguguGGCUg----GCCa -3'
miRNA:   3'- -CGACCGGU-UGACGG--------UCGAgaagaCGG- -5'
3703 5' -55.6 NC_001650.1 + 96851 0.66 0.913325
Target:  5'- cGCUGGCCAuaaUGCUGGCcaagaggcauuUCguggUCaGCCu -3'
miRNA:   3'- -CGACCGGUug-ACGGUCG-----------AGa---AGaCGG- -5'
3703 5' -55.6 NC_001650.1 + 29866 0.67 0.907302
Target:  5'- aCUGGCCAGuCUGCUGGaagacCUggagCUGCUg -3'
miRNA:   3'- cGACCGGUU-GACGGUCga---GAa---GACGG- -5'
3703 5' -55.6 NC_001650.1 + 122091 0.67 0.907302
Target:  5'- cCUGGCCuACUuCCAGCUCacagagaUCUuugGCCa -3'
miRNA:   3'- cGACCGGuUGAcGGUCGAGa------AGA---CGG- -5'
3703 5' -55.6 NC_001650.1 + 51619 0.67 0.907302
Target:  5'- --gGGCCAGCgccuccgcggGCCAGUUCUuguUCUccucgaucGCCa -3'
miRNA:   3'- cgaCCGGUUGa---------CGGUCGAGA---AGA--------CGG- -5'
3703 5' -55.6 NC_001650.1 + 66376 0.67 0.901043
Target:  5'- cCUGGCCAACgugUGCCuGCcCgcgUGCCu -3'
miRNA:   3'- cGACCGGUUG---ACGGuCGaGaagACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.