Results 1 - 20 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3724 | 3' | -54.8 | NC_001650.1 | + | 57837 | 0.66 | 0.959356 |
Target: 5'- uCCgGGcGGUGGCaGCG-GCACGUagGGCa -3' miRNA: 3'- -GGaCCuCUACCGgUGCaUGUGCA--CCG- -5' |
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3724 | 3' | -54.8 | NC_001650.1 | + | 54707 | 0.66 | 0.96911 |
Target: 5'- aCCUGGAuuuUGGaCCugGcuuuuggACcCGUGGCu -3' miRNA: 3'- -GGACCUcu-ACC-GGugCa------UGuGCACCG- -5' |
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3724 | 3' | -54.8 | NC_001650.1 | + | 46915 | 0.66 | 0.96911 |
Target: 5'- gCUGGGGGgggGGuUCGCGauCGCgGUGGCa -3' miRNA: 3'- gGACCUCUa--CC-GGUGCauGUG-CACCG- -5' |
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3724 | 3' | -54.8 | NC_001650.1 | + | 75229 | 0.66 | 0.955681 |
Target: 5'- uCCaGGAGGUGGuCCACagGgACG-GGCu -3' miRNA: 3'- -GGaCCUCUACC-GGUGcaUgUGCaCCG- -5' |
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3724 | 3' | -54.8 | NC_001650.1 | + | 155600 | 0.66 | 0.959356 |
Target: 5'- cCCUGGA---GGCCGCGUAgu--UGGCg -3' miRNA: 3'- -GGACCUcuaCCGGUGCAUgugcACCG- -5' |
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3724 | 3' | -54.8 | NC_001650.1 | + | 49174 | 0.66 | 0.959356 |
Target: 5'- gUCUGGuGuccgagGGCCGCGcGCugGccgagGGCg -3' miRNA: 3'- -GGACCuCua----CCGGUGCaUGugCa----CCG- -5' |
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3724 | 3' | -54.8 | NC_001650.1 | + | 126526 | 0.66 | 0.959356 |
Target: 5'- cCCaGGAGAaGGaCCACGUcgAC-CG-GGCa -3' miRNA: 3'- -GGaCCUCUaCC-GGUGCA--UGuGCaCCG- -5' |
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3724 | 3' | -54.8 | NC_001650.1 | + | 21534 | 0.66 | 0.966066 |
Target: 5'- gCUGG-GAgGGCCGCGgcUGCgGUGGa -3' miRNA: 3'- gGACCuCUaCCGGUGCauGUG-CACCg -5' |
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3724 | 3' | -54.8 | NC_001650.1 | + | 124301 | 0.66 | 0.971954 |
Target: 5'- --gGGAcGA-GGCCGCGgcggACGagGUGGCg -3' miRNA: 3'- ggaCCU-CUaCCGGUGCa---UGUg-CACCG- -5' |
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3724 | 3' | -54.8 | NC_001650.1 | + | 54754 | 0.66 | 0.96911 |
Target: 5'- aCCUGGAuuuUGGaCCugGcuuuuggACcCGUGGCu -3' miRNA: 3'- -GGACCUcu-ACC-GGugCa------UGuGCACCG- -5' |
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3724 | 3' | -54.8 | NC_001650.1 | + | 78664 | 0.66 | 0.966066 |
Target: 5'- uCCUGGAccgccacGGCCugGcggaggACGCG-GGCg -3' miRNA: 3'- -GGACCUcua----CCGGugCa-----UGUGCaCCG- -5' |
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3724 | 3' | -54.8 | NC_001650.1 | + | 71735 | 0.66 | 0.971679 |
Target: 5'- --gGGGGAUcaguuugagacGGCgGCGUGCcucucccACGUGGUg -3' miRNA: 3'- ggaCCUCUA-----------CCGgUGCAUG-------UGCACCG- -5' |
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3724 | 3' | -54.8 | NC_001650.1 | + | 119700 | 0.66 | 0.971954 |
Target: 5'- cCCUGGuaguguaaaAGAcauugugGGUCGCGUGCugG-GGUc -3' miRNA: 3'- -GGACC---------UCUa------CCGGUGCAUGugCaCCG- -5' |
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3724 | 3' | -54.8 | NC_001650.1 | + | 52690 | 0.66 | 0.955681 |
Target: 5'- cCCcGGGc--GGCCACGUugacCGCGUGGg -3' miRNA: 3'- -GGaCCUcuaCCGGUGCAu---GUGCACCg -5' |
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3724 | 3' | -54.8 | NC_001650.1 | + | 75736 | 0.66 | 0.955681 |
Target: 5'- uCCaGGuAGAgGGaccCCACGcGCACGUGGUu -3' miRNA: 3'- -GGaCC-UCUaCC---GGUGCaUGUGCACCG- -5' |
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3724 | 3' | -54.8 | NC_001650.1 | + | 152162 | 0.66 | 0.971954 |
Target: 5'- uCCUGGugauuuGGGUGGCCAUcuuacUugGgGUGGUc -3' miRNA: 3'- -GGACC------UCUACCGGUGc----AugUgCACCG- -5' |
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3724 | 3' | -54.8 | NC_001650.1 | + | 12167 | 0.66 | 0.959356 |
Target: 5'- --cGGcacagacaAGAUGGCCGCcuccccacCACGUGGCc -3' miRNA: 3'- ggaCC--------UCUACCGGUGcau-----GUGCACCG- -5' |
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3724 | 3' | -54.8 | NC_001650.1 | + | 109462 | 0.66 | 0.959356 |
Target: 5'- gCCUGGAGA-GGCUGCucagGCucuuCGUGuGCc -3' miRNA: 3'- -GGACCUCUaCCGGUGca--UGu---GCAC-CG- -5' |
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3724 | 3' | -54.8 | NC_001650.1 | + | 93240 | 0.66 | 0.955681 |
Target: 5'- gCUGGAGGUGaaCCG-GUGCgagaaccuguGCGUGGCc -3' miRNA: 3'- gGACCUCUACc-GGUgCAUG----------UGCACCG- -5' |
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3724 | 3' | -54.8 | NC_001650.1 | + | 123344 | 0.66 | 0.957177 |
Target: 5'- uCCUGGAGGugcUGGCCuCGgccaccgaggacuuuUACACcgacgGGCg -3' miRNA: 3'- -GGACCUCU---ACCGGuGC---------------AUGUGca---CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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