Results 1 - 20 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3724 | 3' | -54.8 | NC_001650.1 | + | 89144 | 1.14 | 0.002648 |
Target: 5'- cCCUGGAGAUGGCCACGUACACGUGGCu -3' miRNA: 3'- -GGACCUCUACCGGUGCAUGUGCACCG- -5' |
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3724 | 3' | -54.8 | NC_001650.1 | + | 145393 | 0.87 | 0.131433 |
Target: 5'- uCCaUGGGGAUGGCCGCGUGgGgGUGGUa -3' miRNA: 3'- -GG-ACCUCUACCGGUGCAUgUgCACCG- -5' |
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3724 | 3' | -54.8 | NC_001650.1 | + | 110916 | 0.81 | 0.293937 |
Target: 5'- uCCgUGGuGAUggaGGCCACGUGCGCG-GGCa -3' miRNA: 3'- -GG-ACCuCUA---CCGGUGCAUGUGCaCCG- -5' |
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3724 | 3' | -54.8 | NC_001650.1 | + | 125601 | 0.79 | 0.391638 |
Target: 5'- cCCUGGAGAU-GCUGC--ACACGUGGCu -3' miRNA: 3'- -GGACCUCUAcCGGUGcaUGUGCACCG- -5' |
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3724 | 3' | -54.8 | NC_001650.1 | + | 147415 | 0.77 | 0.498658 |
Target: 5'- gCCUGGAuGAUGGUgGgGUACAgGcUGGCa -3' miRNA: 3'- -GGACCU-CUACCGgUgCAUGUgC-ACCG- -5' |
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3724 | 3' | -54.8 | NC_001650.1 | + | 30907 | 0.75 | 0.576708 |
Target: 5'- aCUGGAGcucGGCCGCGgACAggggcgggguCGUGGCa -3' miRNA: 3'- gGACCUCua-CCGGUGCaUGU----------GCACCG- -5' |
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3724 | 3' | -54.8 | NC_001650.1 | + | 103019 | 0.75 | 0.596718 |
Target: 5'- uCCgUGGAGAacauccacgugGGCUACGUggcccaccagaaGCACGUGGCc -3' miRNA: 3'- -GG-ACCUCUa----------CCGGUGCA------------UGUGCACCG- -5' |
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3724 | 3' | -54.8 | NC_001650.1 | + | 173919 | 0.75 | 0.606765 |
Target: 5'- --aGGuAGAUGGCCACGUAgGUGUGGa -3' miRNA: 3'- ggaCC-UCUACCGGUGCAUgUGCACCg -5' |
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3724 | 3' | -54.8 | NC_001650.1 | + | 7212 | 0.75 | 0.606765 |
Target: 5'- --aGGuAGAUGGCCACGUAgGUGUGGa -3' miRNA: 3'- ggaCC-UCUACCGGUGCAUgUGCACCg -5' |
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3724 | 3' | -54.8 | NC_001650.1 | + | 111601 | 0.75 | 0.606765 |
Target: 5'- --aGGAGGUGGCCAgCGUGCGgaucauguccacCGUGGg -3' miRNA: 3'- ggaCCUCUACCGGU-GCAUGU------------GCACCg -5' |
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3724 | 3' | -54.8 | NC_001650.1 | + | 81168 | 0.74 | 0.616829 |
Target: 5'- --cGGAGuUGGCCACGUGcuuCugGUGGg -3' miRNA: 3'- ggaCCUCuACCGGUGCAU---GugCACCg -5' |
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3724 | 3' | -54.8 | NC_001650.1 | + | 28391 | 0.74 | 0.616829 |
Target: 5'- cCCUGGAGGa---CGCGUGCGCG-GGCg -3' miRNA: 3'- -GGACCUCUaccgGUGCAUGUGCaCCG- -5' |
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3724 | 3' | -54.8 | NC_001650.1 | + | 102274 | 0.74 | 0.636985 |
Target: 5'- cCCcGGAGGUGGUCAUagACGCGagGGCg -3' miRNA: 3'- -GGaCCUCUACCGGUGcaUGUGCa-CCG- -5' |
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3724 | 3' | -54.8 | NC_001650.1 | + | 122967 | 0.74 | 0.657126 |
Target: 5'- gCUGGAGcaGGCCACcgcccucCACGUGGCc -3' miRNA: 3'- gGACCUCuaCCGGUGcau----GUGCACCG- -5' |
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3724 | 3' | -54.8 | NC_001650.1 | + | 72742 | 0.73 | 0.686175 |
Target: 5'- gCCcGGGGGUGGCCugGgguaucuUGCuaaaGUGGCa -3' miRNA: 3'- -GGaCCUCUACCGGugC-------AUGug--CACCG- -5' |
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3724 | 3' | -54.8 | NC_001650.1 | + | 57885 | 0.73 | 0.70107 |
Target: 5'- aCCUGGGGGUGGUagggCGCGggauaguagcccgggUGCACGgggaagGGCg -3' miRNA: 3'- -GGACCUCUACCG----GUGC---------------AUGUGCa-----CCG- -5' |
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3724 | 3' | -54.8 | NC_001650.1 | + | 123549 | 0.72 | 0.726571 |
Target: 5'- --cGGAGcUGGaCCACGUGCucaACGUGGg -3' miRNA: 3'- ggaCCUCuACC-GGUGCAUG---UGCACCg -5' |
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3724 | 3' | -54.8 | NC_001650.1 | + | 147798 | 0.72 | 0.736245 |
Target: 5'- uCCUGGAGAgccuGCCGCG-ACGCccgGGCc -3' miRNA: 3'- -GGACCUCUac--CGGUGCaUGUGca-CCG- -5' |
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3724 | 3' | -54.8 | NC_001650.1 | + | 59702 | 0.72 | 0.755321 |
Target: 5'- -gUGGAGGUGGUCAUGagggACAUGaggGGCu -3' miRNA: 3'- ggACCUCUACCGGUGCa---UGUGCa--CCG- -5' |
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3724 | 3' | -54.8 | NC_001650.1 | + | 14197 | 0.72 | 0.762837 |
Target: 5'- gCCUGuuuaAGAUGGCCGCcgcuccucacCACGUGGCc -3' miRNA: 3'- -GGACc---UCUACCGGUGcau-------GUGCACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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