miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3724 3' -54.8 NC_001650.1 + 343 0.67 0.943324
Target:  5'- aCCUcGGGGGUGGCCAUcu-CA-GUGGg -3'
miRNA:   3'- -GGA-CCUCUACCGGUGcauGUgCACCg -5'
3724 3' -54.8 NC_001650.1 + 1468 0.66 0.966066
Target:  5'- -gUGGgcggguaagcGGGUGGCCAgGUaaguagguagGCAgGUGGCc -3'
miRNA:   3'- ggACC----------UCUACCGGUgCA----------UGUgCACCG- -5'
3724 3' -54.8 NC_001650.1 + 3272 0.67 0.938752
Target:  5'- gCCUGGcAGGcugcucccauUGGCCG-GUAggggcCACGUGGUg -3'
miRNA:   3'- -GGACC-UCU----------ACCGGUgCAU-----GUGCACCG- -5'
3724 3' -54.8 NC_001650.1 + 7212 0.75 0.606765
Target:  5'- --aGGuAGAUGGCCACGUAgGUGUGGa -3'
miRNA:   3'- ggaCC-UCUACCGGUGCAUgUGCACCg -5'
3724 3' -54.8 NC_001650.1 + 12167 0.66 0.959356
Target:  5'- --cGGcacagacaAGAUGGCCGCcuccccacCACGUGGCc -3'
miRNA:   3'- ggaCC--------UCUACCGGUGcau-----GUGCACCG- -5'
3724 3' -54.8 NC_001650.1 + 14124 0.71 0.773975
Target:  5'- aCCgggGGuccuaAGAUGGCCGCcccgcccCACGUGGCc -3'
miRNA:   3'- -GGa--CC-----UCUACCGGUGcau----GUGCACCG- -5'
3724 3' -54.8 NC_001650.1 + 14197 0.72 0.762837
Target:  5'- gCCUGuuuaAGAUGGCCGCcgcuccucacCACGUGGCc -3'
miRNA:   3'- -GGACc---UCUACCGGUGcau-------GUGCACCG- -5'
3724 3' -54.8 NC_001650.1 + 15311 0.71 0.801014
Target:  5'- -gUGGAGAggGGCgGC-UGCACGgggGGCa -3'
miRNA:   3'- ggACCUCUa-CCGgUGcAUGUGCa--CCG- -5'
3724 3' -54.8 NC_001650.1 + 16245 0.7 0.834955
Target:  5'- -aUGGAGGUGGCCugcccacugACcu-CAUGUGGCc -3'
miRNA:   3'- ggACCUCUACCGG---------UGcauGUGCACCG- -5'
3724 3' -54.8 NC_001650.1 + 21534 0.66 0.966066
Target:  5'- gCUGG-GAgGGCCGCGgcUGCgGUGGa -3'
miRNA:   3'- gGACCuCUaCCGGUGCauGUG-CACCg -5'
3724 3' -54.8 NC_001650.1 + 24082 0.69 0.873317
Target:  5'- cCCUGGccgAGAUGGCCAUGgcggggAUgaggucccuggACGUGGa -3'
miRNA:   3'- -GGACC---UCUACCGGUGCa-----UG-----------UGCACCg -5'
3724 3' -54.8 NC_001650.1 + 24601 0.69 0.880383
Target:  5'- aCCUGGAccUGGCgCACGUGCucACGgacgaGGUg -3'
miRNA:   3'- -GGACCUcuACCG-GUGCAUG--UGCa----CCG- -5'
3724 3' -54.8 NC_001650.1 + 24999 0.67 0.943324
Target:  5'- cCCcGGAGu--GCCugGacagGCugGUGGCc -3'
miRNA:   3'- -GGaCCUCuacCGGugCa---UGugCACCG- -5'
3724 3' -54.8 NC_001650.1 + 26925 0.71 0.809742
Target:  5'- gCUGGuGGUGGuagagucccaguCCagaGCGUGCGCGUGGg -3'
miRNA:   3'- gGACCuCUACC------------GG---UGCAUGUGCACCg -5'
3724 3' -54.8 NC_001650.1 + 27966 0.66 0.96911
Target:  5'- gCUGGuGAccgcgGGCCACG---ACGUGaGCg -3'
miRNA:   3'- gGACCuCUa----CCGGUGCaugUGCAC-CG- -5'
3724 3' -54.8 NC_001650.1 + 28391 0.74 0.616829
Target:  5'- cCCUGGAGGa---CGCGUGCGCG-GGCg -3'
miRNA:   3'- -GGACCUCUaccgGUGCAUGUGCaCCG- -5'
3724 3' -54.8 NC_001650.1 + 28993 0.66 0.966066
Target:  5'- aCCUGGGGGUcaGGuaCCGCGcGgACG-GGCu -3'
miRNA:   3'- -GGACCUCUA--CC--GGUGCaUgUGCaCCG- -5'
3724 3' -54.8 NC_001650.1 + 29205 0.68 0.928916
Target:  5'- cCCUGGcaGUGGCagCACGUGCcccgaaGgGUGGCc -3'
miRNA:   3'- -GGACCucUACCG--GUGCAUG------UgCACCG- -5'
3724 3' -54.8 NC_001650.1 + 30667 0.67 0.938752
Target:  5'- aCCUGGGGgcGGaCGCGcGCGCcgcggGGCg -3'
miRNA:   3'- -GGACCUCuaCCgGUGCaUGUGca---CCG- -5'
3724 3' -54.8 NC_001650.1 + 30907 0.75 0.576708
Target:  5'- aCUGGAGcucGGCCGCGgACAggggcgggguCGUGGCa -3'
miRNA:   3'- gGACCUCua-CCGGUGCaUGU----------GCACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.