miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3724 3' -54.8 NC_001650.1 + 70493 0.7 0.843012
Target:  5'- cCCUGGAGAggGGgCugGUggacaccgugcuGCACGUGaaGCu -3'
miRNA:   3'- -GGACCUCUa-CCgGugCA------------UGUGCAC--CG- -5'
3724 3' -54.8 NC_001650.1 + 15311 0.71 0.801014
Target:  5'- -gUGGAGAggGGCgGC-UGCACGgggGGCa -3'
miRNA:   3'- ggACCUCUa-CCGgUGcAUGUGCa--CCG- -5'
3724 3' -54.8 NC_001650.1 + 182018 0.71 0.801014
Target:  5'- -gUGGAGAggGGCgGC-UGCACGgggGGCa -3'
miRNA:   3'- ggACCUCUa-CCGgUGcAUGUGCa--CCG- -5'
3724 3' -54.8 NC_001650.1 + 26925 0.71 0.809742
Target:  5'- gCUGGuGGUGGuagagucccaguCCagaGCGUGCGCGUGGg -3'
miRNA:   3'- gGACCuCUACC------------GG---UGCAUGUGCACCg -5'
3724 3' -54.8 NC_001650.1 + 157823 0.7 0.82672
Target:  5'- aCCUGGAcGUGGUCagcauacugACGggGCAgGUGGCc -3'
miRNA:   3'- -GGACCUcUACCGG---------UGCa-UGUgCACCG- -5'
3724 3' -54.8 NC_001650.1 + 16245 0.7 0.834955
Target:  5'- -aUGGAGGUGGCCugcccacugACcu-CAUGUGGCc -3'
miRNA:   3'- ggACCUCUACCGG---------UGcauGUGCACCG- -5'
3724 3' -54.8 NC_001650.1 + 182952 0.7 0.834955
Target:  5'- -aUGGAGGUGGCCugcccacugACcu-CAUGUGGCc -3'
miRNA:   3'- ggACCUCUACCGG---------UGcauGUGCACCG- -5'
3724 3' -54.8 NC_001650.1 + 58041 0.7 0.843012
Target:  5'- gUCUGGAGcAUGGUCaugaACGUGCucCGgGGCa -3'
miRNA:   3'- -GGACCUC-UACCGG----UGCAUGu-GCaCCG- -5'
3724 3' -54.8 NC_001650.1 + 71842 0.7 0.843012
Target:  5'- aCCUcauAGA-GGCCAgGUGCACG-GGCa -3'
miRNA:   3'- -GGAcc-UCUaCCGGUgCAUGUGCaCCG- -5'
3724 3' -54.8 NC_001650.1 + 130052 0.71 0.792138
Target:  5'- --gGGAGcgGGCCuACGUGCAgGgGGUg -3'
miRNA:   3'- ggaCCUCuaCCGG-UGCAUGUgCaCCG- -5'
3724 3' -54.8 NC_001650.1 + 37498 0.71 0.783122
Target:  5'- --aGGGGGUGGaCCugGUGCGCaagacGGCg -3'
miRNA:   3'- ggaCCUCUACC-GGugCAUGUGca---CCG- -5'
3724 3' -54.8 NC_001650.1 + 95061 0.72 0.764705
Target:  5'- uUUGuGAGAaagaGCCACGUGUACGUGGCc -3'
miRNA:   3'- gGAC-CUCUac--CGGUGCAUGUGCACCG- -5'
3724 3' -54.8 NC_001650.1 + 30907 0.75 0.576708
Target:  5'- aCUGGAGcucGGCCGCGgACAggggcgggguCGUGGCa -3'
miRNA:   3'- gGACCUCua-CCGGUGCaUGU----------GCACCG- -5'
3724 3' -54.8 NC_001650.1 + 81168 0.74 0.616829
Target:  5'- --cGGAGuUGGCCACGUGcuuCugGUGGg -3'
miRNA:   3'- ggaCCUCuACCGGUGCAU---GugCACCg -5'
3724 3' -54.8 NC_001650.1 + 57885 0.73 0.70107
Target:  5'- aCCUGGGGGUGGUagggCGCGggauaguagcccgggUGCACGgggaagGGCg -3'
miRNA:   3'- -GGACCUCUACCG----GUGC---------------AUGUGCa-----CCG- -5'
3724 3' -54.8 NC_001650.1 + 123549 0.72 0.726571
Target:  5'- --cGGAGcUGGaCCACGUGCucaACGUGGg -3'
miRNA:   3'- ggaCCUCuACC-GGUGCAUG---UGCACCg -5'
3724 3' -54.8 NC_001650.1 + 147798 0.72 0.736245
Target:  5'- uCCUGGAGAgccuGCCGCG-ACGCccgGGCc -3'
miRNA:   3'- -GGACCUCUac--CGGUGCaUGUGca-CCG- -5'
3724 3' -54.8 NC_001650.1 + 59702 0.72 0.755321
Target:  5'- -gUGGAGGUGGUCAUGagggACAUGaggGGCu -3'
miRNA:   3'- ggACCUCUACCGGUGCa---UGUGCa--CCG- -5'
3724 3' -54.8 NC_001650.1 + 129047 0.72 0.763772
Target:  5'- gCCaUGGAGGcggUGGCCGCGcgcgACcccgccaggcuggACGUGGCc -3'
miRNA:   3'- -GG-ACCUCU---ACCGGUGCa---UG-------------UGCACCG- -5'
3724 3' -54.8 NC_001650.1 + 89335 0.72 0.764705
Target:  5'- aCCUGGcccgGGCCGCGUGCuccAUGUugGGCg -3'
miRNA:   3'- -GGACCucuaCCGGUGCAUG---UGCA--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.