miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3724 5' -59.8 NC_001650.1 + 89190 1.04 0.002554
Target:  5'- gUUGCCAAAGCAGACGGCCACCCGGCUc -3'
miRNA:   3'- -AACGGUUUCGUCUGCCGGUGGGCCGA- -5'
3724 5' -59.8 NC_001650.1 + 19402 0.69 0.579581
Target:  5'- uUUGCCGcGGgGGucugcucGCGGCCGCCggCGGCUg -3'
miRNA:   3'- -AACGGUuUCgUC-------UGCCGGUGG--GCCGA- -5'
3724 5' -59.8 NC_001650.1 + 16904 0.69 0.590566
Target:  5'- -gGCCcGGGggaGGGCGGCaGCCCGGCc -3'
miRNA:   3'- aaCGGuUUCg--UCUGCCGgUGGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 161781 0.66 0.768065
Target:  5'- -aGCCcAGGagGGugGGCgCGCCCGaGCa -3'
miRNA:   3'- aaCGGuUUCg-UCugCCG-GUGGGC-CGa -5'
3724 5' -59.8 NC_001650.1 + 125811 0.72 0.395094
Target:  5'- -cGCCAucGCGGAgGGCUAcgcgucCCCGGCc -3'
miRNA:   3'- aaCGGUuuCGUCUgCCGGU------GGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 107123 0.71 0.455998
Target:  5'- aUGCaCAAGGUGGugGGCgaGCCCGcGCUc -3'
miRNA:   3'- aACG-GUUUCGUCugCCGg-UGGGC-CGA- -5'
3724 5' -59.8 NC_001650.1 + 59441 0.71 0.465108
Target:  5'- -cGuCCGcuGCAGACGGCCcCCCGcGCc -3'
miRNA:   3'- aaC-GGUuuCGUCUGCCGGuGGGC-CGa -5'
3724 5' -59.8 NC_001650.1 + 52575 0.71 0.474312
Target:  5'- -gGCgCGcAGGCAGGCGGCCGCCagcucgGGCc -3'
miRNA:   3'- aaCG-GU-UUCGUCUGCCGGUGGg-----CCGa -5'
3724 5' -59.8 NC_001650.1 + 45492 0.7 0.50245
Target:  5'- -gGCCAugcuGGCAGACaggGGCCAUgCUGGCa -3'
miRNA:   3'- aaCGGUu---UCGUCUG---CCGGUG-GGCCGa -5'
3724 5' -59.8 NC_001650.1 + 61787 0.69 0.570625
Target:  5'- -cGCCAAAGgGGACGcGCagguGCCCGGa- -3'
miRNA:   3'- aaCGGUUUCgUCUGC-CGg---UGGGCCga -5'
3724 5' -59.8 NC_001650.1 + 140514 0.69 0.550852
Target:  5'- -cGCCAucugguGGCAGACccuguGGCCGCCUcacuGGCa -3'
miRNA:   3'- aaCGGUu-----UCGUCUG-----CCGGUGGG----CCGa -5'
3724 5' -59.8 NC_001650.1 + 45454 0.7 0.50245
Target:  5'- -gGCCAugcuGGCAGACaggGGCCAUgCUGGCa -3'
miRNA:   3'- aaCGGUu---UCGUCUG---CCGGUG-GGCCGa -5'
3724 5' -59.8 NC_001650.1 + 66098 0.75 0.270724
Target:  5'- --cCCAAGGUGGGCGGgCACCUGGCg -3'
miRNA:   3'- aacGGUUUCGUCUGCCgGUGGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 47543 0.69 0.550852
Target:  5'- -gGCCcacAGAGCGGgcgacuccgGCGGCuCGCCUGGCa -3'
miRNA:   3'- aaCGG---UUUCGUC---------UGCCG-GUGGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 101810 0.73 0.347259
Target:  5'- cUGCCAGuuGGCGGGCuuGGCCAgCUCGGCc -3'
miRNA:   3'- aACGGUU--UCGUCUG--CCGGU-GGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 162196 0.71 0.474312
Target:  5'- -gGCCAGGGCcgGGACGGgCACgCgGGCg -3'
miRNA:   3'- aaCGGUUUCG--UCUGCCgGUG-GgCCGa -5'
3724 5' -59.8 NC_001650.1 + 41339 0.69 0.570625
Target:  5'- -gGCCGGGGCGGcgGCGGCCAuuuCCCuguuGGCc -3'
miRNA:   3'- aaCGGUUUCGUC--UGCCGGU---GGG----CCGa -5'
3724 5' -59.8 NC_001650.1 + 90284 0.69 0.580578
Target:  5'- -gGCCucGGCGGuCGcGCCACCCuGGUUc -3'
miRNA:   3'- aaCGGuuUCGUCuGC-CGGUGGG-CCGA- -5'
3724 5' -59.8 NC_001650.1 + 77401 0.73 0.362735
Target:  5'- -cGuCCAugGAGCGGGUGGCCGuCCCGGCg -3'
miRNA:   3'- aaC-GGU--UUCGUCUGCCGGU-GGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 36722 0.71 0.455998
Target:  5'- -cGCCAcGGC-GACgGGCCACUgGGCUu -3'
miRNA:   3'- aaCGGUuUCGuCUG-CCGGUGGgCCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.