Results 1 - 20 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3726 | 5' | -58.3 | NC_001650.1 | + | 82414 | 0.66 | 0.85019 |
Target: 5'- gCCAAGCCCgCCaaCUGGC---AGGGGAc -3' miRNA: 3'- -GGUUUGGG-GGa-GGCCGguuUCCCCUu -5' |
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3726 | 5' | -58.3 | NC_001650.1 | + | 110040 | 0.66 | 0.833545 |
Target: 5'- cCCGAGCCcauuuuucuauacCCCUgCaGUUAAGGGGGAGg -3' miRNA: 3'- -GGUUUGG-------------GGGAgGcCGGUUUCCCCUU- -5' |
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3726 | 5' | -58.3 | NC_001650.1 | + | 184194 | 0.66 | 0.829466 |
Target: 5'- gCCAcGCCCCCUCCauuuucucaGGCcCAaaugucgacgggcgcGAGGGG-- -3' miRNA: 3'- -GGUuUGGGGGAGG---------CCG-GU---------------UUCCCCuu -5' |
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3726 | 5' | -58.3 | NC_001650.1 | + | 165423 | 0.66 | 0.839981 |
Target: 5'- gCCAGGgCCCCUcuuuuuuuuguaacCCuGCCcggGGAGGGGAGg -3' miRNA: 3'- -GGUUUgGGGGA--------------GGcCGG---UUUCCCCUU- -5' |
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3726 | 5' | -58.3 | NC_001650.1 | + | 169592 | 0.66 | 0.826172 |
Target: 5'- cCCAuaugcccACCCCCUagcccacccuaUUGGCCcAGGGGGGc -3' miRNA: 3'- -GGUu------UGGGGGA-----------GGCCGGuUUCCCCUu -5' |
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3726 | 5' | -58.3 | NC_001650.1 | + | 158636 | 0.66 | 0.85019 |
Target: 5'- aCCuguccCCCCCUCCcuccaggcGGCUAcGGGGGu- -3' miRNA: 3'- -GGuuu--GGGGGAGG--------CCGGUuUCCCCuu -5' |
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3726 | 5' | -58.3 | NC_001650.1 | + | 173138 | 0.66 | 0.826172 |
Target: 5'- cCUAAuUCCCCaUUGGgCAGAGGGGAu -3' miRNA: 3'- -GGUUuGGGGGaGGCCgGUUUCCCCUu -5' |
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3726 | 5' | -58.3 | NC_001650.1 | + | 2885 | 0.66 | 0.826172 |
Target: 5'- cCCAuaugcccACCCCCUagcccacccuaUUGGCCcAGGGGGGc -3' miRNA: 3'- -GGUu------UGGGGGA-----------GGCCGGuUUCCCCUu -5' |
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3726 | 5' | -58.3 | NC_001650.1 | + | 131355 | 0.66 | 0.834356 |
Target: 5'- gCCGggGGCCCUguacgggaCUCUGGCCAAGaggcuGGGGGu -3' miRNA: 3'- -GGU--UUGGGG--------GAGGCCGGUUU-----CCCCUu -5' |
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3726 | 5' | -58.3 | NC_001650.1 | + | 6431 | 0.66 | 0.826172 |
Target: 5'- cCUAAuUCCCCaUUGGgCAGAGGGGAu -3' miRNA: 3'- -GGUUuGGGGGaGGCCgGUUUCCCCUu -5' |
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3726 | 5' | -58.3 | NC_001650.1 | + | 126539 | 0.66 | 0.86527 |
Target: 5'- -aGGGCCCCCUCUuuCC--GGGGGAGa -3' miRNA: 3'- ggUUUGGGGGAGGccGGuuUCCCCUU- -5' |
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3726 | 5' | -58.3 | NC_001650.1 | + | 61194 | 0.66 | 0.85019 |
Target: 5'- -gGGugCCCCUgaCCGGgCGAuguGGGGGGGu -3' miRNA: 3'- ggUUugGGGGA--GGCCgGUU---UCCCCUU- -5' |
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3726 | 5' | -58.3 | NC_001650.1 | + | 97905 | 0.66 | 0.864534 |
Target: 5'- gCCAAACCCCCcuccuccucgucaUCCGaGUCAGagaucuccAGGcGGAc -3' miRNA: 3'- -GGUUUGGGGG-------------AGGC-CGGUU--------UCC-CCUu -5' |
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3726 | 5' | -58.3 | NC_001650.1 | + | 173289 | 0.66 | 0.857827 |
Target: 5'- cCUAAGCCCCCaUUgGGCCAu-GGGc-- -3' miRNA: 3'- -GGUUUGGGGG-AGgCCGGUuuCCCcuu -5' |
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3726 | 5' | -58.3 | NC_001650.1 | + | 131006 | 0.66 | 0.85019 |
Target: 5'- gCGGGCCCUCUaUUGGuCCAacagccAAGGGGAGa -3' miRNA: 3'- gGUUUGGGGGA-GGCC-GGU------UUCCCCUU- -5' |
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3726 | 5' | -58.3 | NC_001650.1 | + | 6582 | 0.66 | 0.857827 |
Target: 5'- cCUAAGCCCCCaUUgGGCCAu-GGGc-- -3' miRNA: 3'- -GGUUUGGGGG-AGgCCGGUuuCCCcuu -5' |
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3726 | 5' | -58.3 | NC_001650.1 | + | 77821 | 0.66 | 0.86527 |
Target: 5'- gCCugcuGGCCUCC-CUGGgCGAGGGGGc- -3' miRNA: 3'- -GGu---UUGGGGGaGGCCgGUUUCCCCuu -5' |
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3726 | 5' | -58.3 | NC_001650.1 | + | 35668 | 0.66 | 0.854795 |
Target: 5'- gUCGAGCCagggguucguggaCCUCCuGGCCGGGGGGc-- -3' miRNA: 3'- -GGUUUGGg------------GGAGG-CCGGUUUCCCcuu -5' |
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3726 | 5' | -58.3 | NC_001650.1 | + | 161250 | 0.66 | 0.825344 |
Target: 5'- -aAGACCCCCUCCaaaaucuGGCgGuuccuGGGGGu -3' miRNA: 3'- ggUUUGGGGGAGG-------CCGgUuu---CCCCUu -5' |
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3726 | 5' | -58.3 | NC_001650.1 | + | 118643 | 0.66 | 0.85019 |
Target: 5'- cCCGAGCCgCCCUCCaccucggauacGGUCuugcgcagGGAGGGGu- -3' miRNA: 3'- -GGUUUGG-GGGAGG-----------CCGG--------UUUCCCCuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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