miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3726 5' -58.3 NC_001650.1 + 2316 0.69 0.657862
Target:  5'- aCCcuGCCCCCUgacuccccgUUGGCCAcauGGGGAu -3'
miRNA:   3'- -GGuuUGGGGGA---------GGCCGGUuu-CCCCUu -5'
3726 5' -58.3 NC_001650.1 + 99422 0.7 0.627876
Target:  5'- gCCAAGCCCaCCaCCGGgaCCAccgaggugcGAGGGGAc -3'
miRNA:   3'- -GGUUUGGG-GGaGGCC--GGU---------UUCCCCUu -5'
3726 5' -58.3 NC_001650.1 + 146077 0.7 0.627876
Target:  5'- uCCAgaaGACCCUCUUggUGGUCAGcAGGGGGAa -3'
miRNA:   3'- -GGU---UUGGGGGAG--GCCGGUU-UCCCCUU- -5'
3726 5' -58.3 NC_001650.1 + 133276 0.7 0.637878
Target:  5'- gCCgAAGCCCCCgcgCCGagaGAAGGGGAGg -3'
miRNA:   3'- -GG-UUUGGGGGa--GGCcggUUUCCCCUU- -5'
3726 5' -58.3 NC_001650.1 + 164129 0.7 0.637878
Target:  5'- -gAAACCCCgUCUGGCCGcGGGGc-- -3'
miRNA:   3'- ggUUUGGGGgAGGCCGGUuUCCCcuu -5'
3726 5' -58.3 NC_001650.1 + 5840 0.7 0.647876
Target:  5'- cCUAGGCCCCCaUUgGGCCAuuGGGa-- -3'
miRNA:   3'- -GGUUUGGGGG-AGgCCGGUuuCCCcuu -5'
3726 5' -58.3 NC_001650.1 + 172547 0.7 0.647876
Target:  5'- cCUAGGCCCCCaUUgGGCCAuuGGGa-- -3'
miRNA:   3'- -GGUUUGGGGG-AGgCCGGUuuCCCcuu -5'
3726 5' -58.3 NC_001650.1 + 7707 0.7 0.647876
Target:  5'- cCCGAGCCCCCaUUgGGU---GGGGGAc -3'
miRNA:   3'- -GGUUUGGGGG-AGgCCGguuUCCCCUu -5'
3726 5' -58.3 NC_001650.1 + 174414 0.7 0.647876
Target:  5'- cCCGAGCCCCCaUUgGGU---GGGGGAc -3'
miRNA:   3'- -GGUUUGGGGG-AGgCCGguuUCCCCUu -5'
3726 5' -58.3 NC_001650.1 + 21352 0.71 0.578054
Target:  5'- gCAAGCgUUCCUCUuuuaagagGGCCAGAGGGGGg -3'
miRNA:   3'- gGUUUG-GGGGAGG--------CCGGUUUCCCCUu -5'
3726 5' -58.3 NC_001650.1 + 61226 0.71 0.568174
Target:  5'- gCCuGACCCCCgcccguccCCGGCCAcgugGAGGGcGGu -3'
miRNA:   3'- -GGuUUGGGGGa-------GGCCGGU----UUCCC-CUu -5'
3726 5' -58.3 NC_001650.1 + 60621 0.72 0.529141
Target:  5'- gUAGGCgCCCUgCCGGUUGAGGGGGGc -3'
miRNA:   3'- gGUUUGgGGGA-GGCCGGUUUCCCCUu -5'
3726 5' -58.3 NC_001650.1 + 168715 0.79 0.217324
Target:  5'- cCCGGcccACCCUCUCCccauuggccauggaGGCCAGGGGGGAGg -3'
miRNA:   3'- -GGUU---UGGGGGAGG--------------CCGGUUUCCCCUU- -5'
3726 5' -58.3 NC_001650.1 + 95702 0.78 0.235122
Target:  5'- aCAGGgacuUCCCCUuuGGCCGGAGGGGGu -3'
miRNA:   3'- gGUUU----GGGGGAggCCGGUUUCCCCUu -5'
3726 5' -58.3 NC_001650.1 + 1621 0.75 0.346581
Target:  5'- cCCcuACCCCCaUUGGCCgAGAGGGGAu -3'
miRNA:   3'- -GGuuUGGGGGaGGCCGG-UUUCCCCUu -5'
3726 5' -58.3 NC_001650.1 + 168328 0.75 0.346581
Target:  5'- cCCcuACCCCCaUUGGCCgAGAGGGGAu -3'
miRNA:   3'- -GGuuUGGGGGaGGCCGG-UUUCCCCUu -5'
3726 5' -58.3 NC_001650.1 + 1269 0.73 0.463485
Target:  5'- cCCGGGCCCCCaUUGGCUAGAuGGGAc -3'
miRNA:   3'- -GGUUUGGGGGaGGCCGGUUUcCCCUu -5'
3726 5' -58.3 NC_001650.1 + 167976 0.73 0.463485
Target:  5'- cCCGGGCCCCCaUUGGCUAGAuGGGAc -3'
miRNA:   3'- -GGUUUGGGGGaGGCCGGUUUcCCCUu -5'
3726 5' -58.3 NC_001650.1 + 2746 0.73 0.472614
Target:  5'- uCUAGGCCUCUaUUGGCCAGAGGGGu- -3'
miRNA:   3'- -GGUUUGGGGGaGGCCGGUUUCCCCuu -5'
3726 5' -58.3 NC_001650.1 + 169453 0.73 0.472614
Target:  5'- uCUAGGCCUCUaUUGGCCAGAGGGGu- -3'
miRNA:   3'- -GGUUUGGGGGaGGCCGGUUUCCCCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.