miRNA display CGI


Results 1 - 20 of 142 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3726 5' -58.3 NC_001650.1 + 88509 1.08 0.002561
Target:  5'- gCCAAACCCCCUCCGGCCAAAGGGGAAg -3'
miRNA:   3'- -GGUUUGGGGGAGGCCGGUUUCCCCUU- -5'
3726 5' -58.3 NC_001650.1 + 126779 0.81 0.155351
Target:  5'- cCUGAACCCCUUCCaGGCCucuGGGGGAGu -3'
miRNA:   3'- -GGUUUGGGGGAGG-CCGGuu-UCCCCUU- -5'
3726 5' -58.3 NC_001650.1 + 2008 0.79 0.217324
Target:  5'- cCCGGcccACCCUCUCCccauuggccauggaGGCCAGGGGGGAGg -3'
miRNA:   3'- -GGUU---UGGGGGAGG--------------CCGGUUUCCCCUU- -5'
3726 5' -58.3 NC_001650.1 + 168715 0.79 0.217324
Target:  5'- cCCGGcccACCCUCUCCccauuggccauggaGGCCAGGGGGGAGg -3'
miRNA:   3'- -GGUU---UGGGGGAGG--------------CCGGUUUCCCCUU- -5'
3726 5' -58.3 NC_001650.1 + 95702 0.78 0.235122
Target:  5'- aCAGGgacuUCCCCUuuGGCCGGAGGGGGu -3'
miRNA:   3'- gGUUU----GGGGGAggCCGGUUUCCCCUu -5'
3726 5' -58.3 NC_001650.1 + 125653 0.78 0.252349
Target:  5'- cCCGGACgCCCUgCCcggGGCCAAGGGGGGc -3'
miRNA:   3'- -GGUUUGgGGGA-GG---CCGGUUUCCCCUu -5'
3726 5' -58.3 NC_001650.1 + 182592 0.77 0.270601
Target:  5'- aCAAuAUCCCCUCuCGGCCAAuGGGGGu -3'
miRNA:   3'- gGUU-UGGGGGAG-GCCGGUUuCCCCUu -5'
3726 5' -58.3 NC_001650.1 + 15885 0.77 0.270601
Target:  5'- aCAAuAUCCCCUCuCGGCCAAuGGGGGu -3'
miRNA:   3'- gGUU-UGGGGGAG-GCCGGUUuCCCCUu -5'
3726 5' -58.3 NC_001650.1 + 177945 0.76 0.324434
Target:  5'- cCCAcuACCCCCUCUGcCCAAuGGGGAAu -3'
miRNA:   3'- -GGUu-UGGGGGAGGCcGGUUuCCCCUU- -5'
3726 5' -58.3 NC_001650.1 + 11238 0.76 0.324434
Target:  5'- cCCAcuACCCCCUCUGcCCAAuGGGGAAu -3'
miRNA:   3'- -GGUu-UGGGGGAGGCcGGUUuCCCCUU- -5'
3726 5' -58.3 NC_001650.1 + 1621 0.75 0.346581
Target:  5'- cCCcuACCCCCaUUGGCCgAGAGGGGAu -3'
miRNA:   3'- -GGuuUGGGGGaGGCCGG-UUUCCCCUu -5'
3726 5' -58.3 NC_001650.1 + 168328 0.75 0.346581
Target:  5'- cCCcuACCCCCaUUGGCCgAGAGGGGAu -3'
miRNA:   3'- -GGuuUGGGGGaGGCCGG-UUUCCCCUu -5'
3726 5' -58.3 NC_001650.1 + 47461 0.75 0.3542
Target:  5'- gCCuGACCCCUgacacccgaUCCGGUgAGGGGGGGAa -3'
miRNA:   3'- -GGuUUGGGGG---------AGGCCGgUUUCCCCUU- -5'
3726 5' -58.3 NC_001650.1 + 133566 0.75 0.36979
Target:  5'- gUCAGGCCCCCcgcgggcaCCGGCCccucGAGGGGGc -3'
miRNA:   3'- -GGUUUGGGGGa-------GGCCGGu---UUCCCCUu -5'
3726 5' -58.3 NC_001650.1 + 11075 0.75 0.36979
Target:  5'- cCCAuAUCCCCUCUGcCCAAuGGGGAAu -3'
miRNA:   3'- -GGUuUGGGGGAGGCcGGUUuCCCCUU- -5'
3726 5' -58.3 NC_001650.1 + 177782 0.75 0.36979
Target:  5'- cCCAuAUCCCCUCUGcCCAAuGGGGAAu -3'
miRNA:   3'- -GGUuUGGGGGAGGCcGGUUuCCCCUU- -5'
3726 5' -58.3 NC_001650.1 + 14761 0.75 0.377759
Target:  5'- cCCAugaCCCCUCUGGCCAauagaggccuaGAGGGGu- -3'
miRNA:   3'- -GGUuugGGGGAGGCCGGU-----------UUCCCCuu -5'
3726 5' -58.3 NC_001650.1 + 181468 0.75 0.377759
Target:  5'- cCCAugaCCCCUCUGGCCAauagaggccuaGAGGGGu- -3'
miRNA:   3'- -GGUuugGGGGAGGCCGGU-----------UUCCCCuu -5'
3726 5' -58.3 NC_001650.1 + 13085 0.74 0.385842
Target:  5'- gCCcGGCCCUCUgcggucgaggCCGGCCAAuGGGGGAc -3'
miRNA:   3'- -GGuUUGGGGGA----------GGCCGGUUuCCCCUU- -5'
3726 5' -58.3 NC_001650.1 + 179792 0.74 0.385842
Target:  5'- gCCcGGCCCUCUgcggucgaggCCGGCCAAuGGGGGAc -3'
miRNA:   3'- -GGuUUGGGGGA----------GGCCGGUUuCCCCUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.