miRNA display CGI


Results 1 - 20 of 142 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3726 5' -58.3 NC_001650.1 + 79 0.66 0.85019
Target:  5'- aCAAACCCCC-CCGa--AAAGGGGc- -3'
miRNA:   3'- gGUUUGGGGGaGGCcggUUUCCCCuu -5'
3726 5' -58.3 NC_001650.1 + 288 0.69 0.697528
Target:  5'- aCAGcGCCCCCUgCCGGCC-GAGGcGAu -3'
miRNA:   3'- gGUU-UGGGGGA-GGCCGGuUUCCcCUu -5'
3726 5' -58.3 NC_001650.1 + 551 0.66 0.85019
Target:  5'- -gAAGCCCCCUgUGcGCauGAGGGGGu -3'
miRNA:   3'- ggUUUGGGGGAgGC-CGguUUCCCCUu -5'
3726 5' -58.3 NC_001650.1 + 687 0.67 0.791826
Target:  5'- cCCAAACCCcaCCUCgGGCCGcccauuggccGAGaGGAGu -3'
miRNA:   3'- -GGUUUGGG--GGAGgCCGGU----------UUCcCCUU- -5'
3726 5' -58.3 NC_001650.1 + 1269 0.73 0.463485
Target:  5'- cCCGGGCCCCCaUUGGCUAGAuGGGAc -3'
miRNA:   3'- -GGUUUGGGGGaGGCCGGUUUcCCCUu -5'
3726 5' -58.3 NC_001650.1 + 1621 0.75 0.346581
Target:  5'- cCCcuACCCCCaUUGGCCgAGAGGGGAu -3'
miRNA:   3'- -GGuuUGGGGGaGGCCGG-UUUCCCCUu -5'
3726 5' -58.3 NC_001650.1 + 2008 0.79 0.217324
Target:  5'- cCCGGcccACCCUCUCCccauuggccauggaGGCCAGGGGGGAGg -3'
miRNA:   3'- -GGUU---UGGGGGAGG--------------CCGGUUUCCCCUU- -5'
3726 5' -58.3 NC_001650.1 + 2316 0.69 0.657862
Target:  5'- aCCcuGCCCCCUgacuccccgUUGGCCAcauGGGGAu -3'
miRNA:   3'- -GGuuUGGGGGA---------GGCCGGUuu-CCCCUu -5'
3726 5' -58.3 NC_001650.1 + 2746 0.73 0.472614
Target:  5'- uCUAGGCCUCUaUUGGCCAGAGGGGu- -3'
miRNA:   3'- -GGUUUGGGGGaGGCCGGUUUCCCCuu -5'
3726 5' -58.3 NC_001650.1 + 2885 0.66 0.826172
Target:  5'- cCCAuaugcccACCCCCUagcccacccuaUUGGCCcAGGGGGGc -3'
miRNA:   3'- -GGUu------UGGGGGA-----------GGCCGGuUUCCCCUu -5'
3726 5' -58.3 NC_001650.1 + 4013 0.68 0.726756
Target:  5'- aCAGAgUCCCCaUUGGCCAGAaauGGGGAAc -3'
miRNA:   3'- gGUUU-GGGGGaGGCCGGUUU---CCCCUU- -5'
3726 5' -58.3 NC_001650.1 + 4189 0.69 0.707335
Target:  5'- aCGGGCCCuauaugguCCUaCCGGUCAuGGGGGGu -3'
miRNA:   3'- gGUUUGGG--------GGA-GGCCGGUuUCCCCUu -5'
3726 5' -58.3 NC_001650.1 + 4730 0.67 0.809306
Target:  5'- uCCGGAggCCCUCCGuGCCcggcucGGGGAAg -3'
miRNA:   3'- -GGUUUggGGGAGGC-CGGuuu---CCCCUU- -5'
3726 5' -58.3 NC_001650.1 + 5840 0.7 0.647876
Target:  5'- cCUAGGCCCCCaUUgGGCCAuuGGGa-- -3'
miRNA:   3'- -GGUUUGGGGG-AGgCCGGUuuCCCcuu -5'
3726 5' -58.3 NC_001650.1 + 6431 0.66 0.826172
Target:  5'- cCUAAuUCCCCaUUGGgCAGAGGGGAu -3'
miRNA:   3'- -GGUUuGGGGGaGGCCgGUUUCCCCUu -5'
3726 5' -58.3 NC_001650.1 + 6582 0.66 0.857827
Target:  5'- cCUAAGCCCCCaUUgGGCCAu-GGGc-- -3'
miRNA:   3'- -GGUUUGGGGG-AGgCCGGUuuCCCcuu -5'
3726 5' -58.3 NC_001650.1 + 6820 0.68 0.736355
Target:  5'- cCCAAGgCCCCUgCCacccauugGGCCAGGGGGc-- -3'
miRNA:   3'- -GGUUUgGGGGA-GG--------CCGGUUUCCCcuu -5'
3726 5' -58.3 NC_001650.1 + 7707 0.7 0.647876
Target:  5'- cCCGAGCCCCCaUUgGGU---GGGGGAc -3'
miRNA:   3'- -GGUUUGGGGG-AGgCCGguuUCCCCUu -5'
3726 5' -58.3 NC_001650.1 + 11075 0.75 0.36979
Target:  5'- cCCAuAUCCCCUCUGcCCAAuGGGGAAu -3'
miRNA:   3'- -GGUuUGGGGGAGGCcGGUUuCCCCUU- -5'
3726 5' -58.3 NC_001650.1 + 11238 0.76 0.324434
Target:  5'- cCCAcuACCCCCUCUGcCCAAuGGGGAAu -3'
miRNA:   3'- -GGUu-UGGGGGAGGCcGGUUuCCCCUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.