Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3731 | 3' | -58.5 | NC_001650.1 | + | 21520 | 0.66 | 0.847488 |
Target: 5'- cCGGGGgggcuaCUGCuGGGA-GGGC-CGCg -3' miRNA: 3'- aGCCCCaa----GACGuCCUUcCCCGaGUG- -5' |
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3731 | 3' | -58.5 | NC_001650.1 | + | 36496 | 0.66 | 0.839587 |
Target: 5'- cCGGGGg---GCAGGGccaggcuGGGGCUgUACu -3' miRNA: 3'- aGCCCCaagaCGUCCUu------CCCCGA-GUG- -5' |
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3731 | 3' | -58.5 | NC_001650.1 | + | 28364 | 0.66 | 0.839587 |
Target: 5'- gUGGGGgUCUcGCccGGGGAGuGGCUCAa -3' miRNA: 3'- aGCCCCaAGA-CG--UCCUUCcCCGAGUg -5' |
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3731 | 3' | -58.5 | NC_001650.1 | + | 8697 | 0.66 | 0.831505 |
Target: 5'- -gGGGGcgC-GCGcGGGAGGGGCaucgggCACa -3' miRNA: 3'- agCCCCaaGaCGU-CCUUCCCCGa-----GUG- -5' |
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3731 | 3' | -58.5 | NC_001650.1 | + | 175404 | 0.66 | 0.831505 |
Target: 5'- -gGGGGcgC-GCGcGGGAGGGGCaucgggCACa -3' miRNA: 3'- agCCCCaaGaCGU-CCUUCCCCGa-----GUG- -5' |
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3731 | 3' | -58.5 | NC_001650.1 | + | 28765 | 0.66 | 0.82074 |
Target: 5'- uUCGGGG-UCUuugacggugccgccGCcGGAGGGGGCg--- -3' miRNA: 3'- -AGCCCCaAGA--------------CGuCCUUCCCCGagug -5' |
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3731 | 3' | -58.5 | NC_001650.1 | + | 129198 | 0.66 | 0.814827 |
Target: 5'- -aGGGGUcuaaggggaggaUCaGguGGAGGGGGgUCGa -3' miRNA: 3'- agCCCCA------------AGaCguCCUUCCCCgAGUg -5' |
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3731 | 3' | -58.5 | NC_001650.1 | + | 79196 | 0.66 | 0.814827 |
Target: 5'- aUCGGGcg-CUGgAGGAcccGGGGGCUg-- -3' miRNA: 3'- -AGCCCcaaGACgUCCU---UCCCCGAgug -5' |
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3731 | 3' | -58.5 | NC_001650.1 | + | 47493 | 0.66 | 0.814827 |
Target: 5'- cCGGGGUcUCUGaCAcGGuGGGGGUUUg- -3' miRNA: 3'- aGCCCCA-AGAC-GU-CCuUCCCCGAGug -5' |
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3731 | 3' | -58.5 | NC_001650.1 | + | 65301 | 0.66 | 0.814827 |
Target: 5'- uUCGGGGacaagCUGgAGaAGGGGGUgCACa -3' miRNA: 3'- -AGCCCCaa---GACgUCcUUCCCCGaGUG- -5' |
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3731 | 3' | -58.5 | NC_001650.1 | + | 96215 | 0.67 | 0.806246 |
Target: 5'- cCGGGcaaCUGCuuaaaaaaggGGGAGGGGGCcCGCc -3' miRNA: 3'- aGCCCcaaGACG----------UCCUUCCCCGaGUG- -5' |
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3731 | 3' | -58.5 | NC_001650.1 | + | 38051 | 0.67 | 0.806246 |
Target: 5'- aCGGGGUgc-GCAGGggGgacaggacGGGCgugggCACc -3' miRNA: 3'- aGCCCCAagaCGUCCuuC--------CCCGa----GUG- -5' |
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3731 | 3' | -58.5 | NC_001650.1 | + | 101923 | 0.67 | 0.806246 |
Target: 5'- aCGGGGgcggGUGGGGcgagcgGGGGGCUCc- -3' miRNA: 3'- aGCCCCaagaCGUCCU------UCCCCGAGug -5' |
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3731 | 3' | -58.5 | NC_001650.1 | + | 175602 | 0.67 | 0.797514 |
Target: 5'- aUGGGGgUCUGguGGGuguGGGGgUCc- -3' miRNA: 3'- aGCCCCaAGACguCCUu--CCCCgAGug -5' |
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3731 | 3' | -58.5 | NC_001650.1 | + | 8895 | 0.67 | 0.797514 |
Target: 5'- aUGGGGgUCUGguGGGuguGGGGgUCc- -3' miRNA: 3'- aGCCCCaAGACguCCUu--CCCCgAGug -5' |
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3731 | 3' | -58.5 | NC_001650.1 | + | 48915 | 0.67 | 0.783248 |
Target: 5'- cUCGGGGacgacugcacccaggUUCUGCugAGGAGGGuGGCg--- -3' miRNA: 3'- -AGCCCC---------------AAGACG--UCCUUCC-CCGagug -5' |
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3731 | 3' | -58.5 | NC_001650.1 | + | 121829 | 0.67 | 0.783248 |
Target: 5'- aCGGGGgcgcgggaaccgUCUcgcgcaaGCAGGugcgaaaguucugcGAGGGGCUCAa -3' miRNA: 3'- aGCCCCa-----------AGA-------CGUCC--------------UUCCCCGAGUg -5' |
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3731 | 3' | -58.5 | NC_001650.1 | + | 118660 | 0.67 | 0.779629 |
Target: 5'- cUCGGauacGG-UCUugcGCAGGGAGGGGUagGCg -3' miRNA: 3'- -AGCC----CCaAGA---CGUCCUUCCCCGagUG- -5' |
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3731 | 3' | -58.5 | NC_001650.1 | + | 18023 | 0.67 | 0.761237 |
Target: 5'- gUGGuGGUggcGCGGGGuggGGuGGGCUCACa -3' miRNA: 3'- aGCC-CCAagaCGUCCU---UC-CCCGAGUG- -5' |
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3731 | 3' | -58.5 | NC_001650.1 | + | 50896 | 0.67 | 0.759372 |
Target: 5'- gCGGGGggcuUCUGCaAGGugcacgugacccAGGGGgUCACc -3' miRNA: 3'- aGCCCCa---AGACG-UCCu-----------UCCCCgAGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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