Results 1 - 20 of 31 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3825 | 3' | -49.7 | NC_001650.1 | + | 182943 | 0.66 | 0.998875 |
Target: 5'- -aUgGGCGUCccaucuAGCCAAUgGGGGCcCGg -3' miRNA: 3'- gaAgUCGCAG------UUGGUUAgUCUCGuGC- -5' |
|||||||
3825 | 3' | -49.7 | NC_001650.1 | + | 115580 | 0.66 | 0.998875 |
Target: 5'- --cCGGUGagCAGCCucUCGGuGCACGg -3' miRNA: 3'- gaaGUCGCa-GUUGGuuAGUCuCGUGC- -5' |
|||||||
3825 | 3' | -49.7 | NC_001650.1 | + | 59975 | 0.66 | 0.998027 |
Target: 5'- --cCAGgGUCAGCCg--CAGGGCGg- -3' miRNA: 3'- gaaGUCgCAGUUGGuuaGUCUCGUgc -5' |
|||||||
3825 | 3' | -49.7 | NC_001650.1 | + | 16236 | 0.66 | 0.998875 |
Target: 5'- -aUgGGCGUCccaucuAGCCAAUgGGGGCcCGg -3' miRNA: 3'- gaAgUCGCAG------UUGGUUAgUCUCGuGC- -5' |
|||||||
3825 | 3' | -49.7 | NC_001650.1 | + | 146986 | 0.67 | 0.997646 |
Target: 5'- --cCGGgGcUCugGACCAAUCAGAGgGCGc -3' miRNA: 3'- gaaGUCgC-AG--UUGGUUAGUCUCgUGC- -5' |
|||||||
3825 | 3' | -49.7 | NC_001650.1 | + | 108907 | 0.67 | 0.997205 |
Target: 5'- --cCuGCGUCcACUAcgCGGAGCugGc -3' miRNA: 3'- gaaGuCGCAGuUGGUuaGUCUCGugC- -5' |
|||||||
3825 | 3' | -49.7 | NC_001650.1 | + | 23000 | 0.67 | 0.997205 |
Target: 5'- cCUUCGGCugccggGUCAGCCugcUCGG-GCACc -3' miRNA: 3'- -GAAGUCG------CAGUUGGuu-AGUCuCGUGc -5' |
|||||||
3825 | 3' | -49.7 | NC_001650.1 | + | 32608 | 0.67 | 0.997205 |
Target: 5'- gCUUUAGCGccguacaggUCAACgAGggGGGGCACGu -3' miRNA: 3'- -GAAGUCGC---------AGUUGgUUagUCUCGUGC- -5' |
|||||||
3825 | 3' | -49.7 | NC_001650.1 | + | 33731 | 0.67 | 0.995454 |
Target: 5'- -aUCAGUGUUGACCAAa-AGAGCGu- -3' miRNA: 3'- gaAGUCGCAGUUGGUUagUCUCGUgc -5' |
|||||||
3825 | 3' | -49.7 | NC_001650.1 | + | 75714 | 0.67 | 0.995454 |
Target: 5'- -gUCAGCGcCAGCguGUUGGGGCuCGu -3' miRNA: 3'- gaAGUCGCaGUUGguUAGUCUCGuGC- -5' |
|||||||
3825 | 3' | -49.7 | NC_001650.1 | + | 71011 | 0.67 | 0.995238 |
Target: 5'- --cCAGCGUCGaggacgaccugaacGCC-AUCucGAGCGCGg -3' miRNA: 3'- gaaGUCGCAGU--------------UGGuUAGu-CUCGUGC- -5' |
|||||||
3825 | 3' | -49.7 | NC_001650.1 | + | 137957 | 0.68 | 0.992897 |
Target: 5'- -cUCGGgGUCAGCCAc-CGGucGCGCGg -3' miRNA: 3'- gaAGUCgCAGUUGGUuaGUCu-CGUGC- -5' |
|||||||
3825 | 3' | -49.7 | NC_001650.1 | + | 120534 | 0.69 | 0.989305 |
Target: 5'- -cUgGGCGccggCGACCug-CAGGGCGCGg -3' miRNA: 3'- gaAgUCGCa---GUUGGuuaGUCUCGUGC- -5' |
|||||||
3825 | 3' | -49.7 | NC_001650.1 | + | 155756 | 0.69 | 0.987835 |
Target: 5'- -cUCGGUG-CAGCCGggCAGgcacAGCACGg -3' miRNA: 3'- gaAGUCGCaGUUGGUuaGUC----UCGUGC- -5' |
|||||||
3825 | 3' | -49.7 | NC_001650.1 | + | 130681 | 0.69 | 0.984432 |
Target: 5'- -aUCAGCGUCGAgCAG-CAGaAGCuCGa -3' miRNA: 3'- gaAGUCGCAGUUgGUUaGUC-UCGuGC- -5' |
|||||||
3825 | 3' | -49.7 | NC_001650.1 | + | 104920 | 0.7 | 0.972801 |
Target: 5'- uCUUCAG-GUCAAUCAGguUCAGcGCGCa -3' miRNA: 3'- -GAAGUCgCAGUUGGUU--AGUCuCGUGc -5' |
|||||||
3825 | 3' | -49.7 | NC_001650.1 | + | 138235 | 0.7 | 0.975518 |
Target: 5'- --cCuGCGcucUCGGCCAAUCGGcGCGCGg -3' miRNA: 3'- gaaGuCGC---AGUUGGUUAGUCuCGUGC- -5' |
|||||||
3825 | 3' | -49.7 | NC_001650.1 | + | 135296 | 0.7 | 0.972801 |
Target: 5'- ---aGGUGUUGACCAccGUCAGGGCGgCGg -3' miRNA: 3'- gaagUCGCAGUUGGU--UAGUCUCGU-GC- -5' |
|||||||
3825 | 3' | -49.7 | NC_001650.1 | + | 126163 | 0.7 | 0.972801 |
Target: 5'- -aUCAGCGU--GCCc--CGGAGCACGu -3' miRNA: 3'- gaAGUCGCAguUGGuuaGUCUCGUGC- -5' |
|||||||
3825 | 3' | -49.7 | NC_001650.1 | + | 49536 | 0.7 | 0.969872 |
Target: 5'- ---gGGgGUCAGCCucUCAGAGCgACGu -3' miRNA: 3'- gaagUCgCAGUUGGuuAGUCUCG-UGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home