miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3828 3' -56.5 NC_001650.1 + 47343 0.66 0.92633
Target:  5'- aGCCCgggucGCCCCgcccgAGcGCCUCUcgcGGCu -3'
miRNA:   3'- -CGGG-----UGGGGaga--UC-CGGAGAuaaCCG- -5'
3828 3' -56.5 NC_001650.1 + 125136 0.66 0.92633
Target:  5'- cCCgCACCCCggagcucaUAGGCCUCccg-GGUc -3'
miRNA:   3'- cGG-GUGGGGag------AUCCGGAGauaaCCG- -5'
3828 3' -56.5 NC_001650.1 + 118272 0.66 0.92633
Target:  5'- aGCCCGUCCCUCUcgucguAGGCCagaaa-GGCc -3'
miRNA:   3'- -CGGGUGGGGAGA------UCCGGagauaaCCG- -5'
3828 3' -56.5 NC_001650.1 + 130499 0.66 0.92633
Target:  5'- gGUCCAgagCCCUCUcGGCCgcgCUcugAUUGGUc -3'
miRNA:   3'- -CGGGUg--GGGAGAuCCGGa--GA---UAACCG- -5'
3828 3' -56.5 NC_001650.1 + 116984 0.66 0.92633
Target:  5'- gGCCgCGCCUCUCgcuGGCCaggcucaucCUGUccgGGCa -3'
miRNA:   3'- -CGG-GUGGGGAGau-CCGGa--------GAUAa--CCG- -5'
3828 3' -56.5 NC_001650.1 + 168718 0.66 0.92633
Target:  5'- gGCCCACCCuCUCcccauuGGCCa-UGgaGGCc -3'
miRNA:   3'- -CGGGUGGG-GAGau----CCGGagAUaaCCG- -5'
3828 3' -56.5 NC_001650.1 + 2011 0.66 0.92633
Target:  5'- gGCCCACCCuCUCcccauuGGCCa-UGgaGGCc -3'
miRNA:   3'- -CGGGUGGG-GAGau----CCGGagAUaaCCG- -5'
3828 3' -56.5 NC_001650.1 + 134187 0.66 0.92633
Target:  5'- aCCCAaagcCCCCUC-AGGCC-Cg---GGCc -3'
miRNA:   3'- cGGGU----GGGGAGaUCCGGaGauaaCCG- -5'
3828 3' -56.5 NC_001650.1 + 59324 0.66 0.925801
Target:  5'- uGCCCGcgucuccCCCCUCUcccucGaGCCUCgaaaGGCg -3'
miRNA:   3'- -CGGGU-------GGGGAGAu----C-CGGAGauaaCCG- -5'
3828 3' -56.5 NC_001650.1 + 125202 0.66 0.925801
Target:  5'- uCCCGCCCCggaggCgacgGGGCCccggcuuucaaucUCUGgcacGGCg -3'
miRNA:   3'- cGGGUGGGGa----Ga---UCCGG-------------AGAUaa--CCG- -5'
3828 3' -56.5 NC_001650.1 + 59202 0.66 0.920938
Target:  5'- cGCCCccgggacCCCCUCUGGcgaucgagaGCCUCUcgcagaUGGUc -3'
miRNA:   3'- -CGGGu------GGGGAGAUC---------CGGAGAua----ACCG- -5'
3828 3' -56.5 NC_001650.1 + 74373 0.66 0.920938
Target:  5'- uCCUACCUCUCcgAGGCCaccc-UGGCc -3'
miRNA:   3'- cGGGUGGGGAGa-UCCGGagauaACCG- -5'
3828 3' -56.5 NC_001650.1 + 45964 0.66 0.920938
Target:  5'- gGCCaguuCCCCUCUcaGCCgcgCgccgAUUGGCc -3'
miRNA:   3'- -CGGgu--GGGGAGAucCGGa--Ga---UAACCG- -5'
3828 3' -56.5 NC_001650.1 + 160643 0.66 0.920938
Target:  5'- aGCCCACCCCguuggagaAGGCUccaUCa--UGGCc -3'
miRNA:   3'- -CGGGUGGGGaga-----UCCGG---AGauaACCG- -5'
3828 3' -56.5 NC_001650.1 + 167326 0.66 0.915313
Target:  5'- cGCCCuCCCC-C-GGGCCcCcAUUGGUc -3'
miRNA:   3'- -CGGGuGGGGaGaUCCGGaGaUAACCG- -5'
3828 3' -56.5 NC_001650.1 + 26753 0.66 0.915313
Target:  5'- uGUgCGCCgCCUCcAGGCagCUCU-UUGGCu -3'
miRNA:   3'- -CGgGUGG-GGAGaUCCG--GAGAuAACCG- -5'
3828 3' -56.5 NC_001650.1 + 619 0.66 0.915313
Target:  5'- cGCCCuCCCC-C-GGGCCcCcAUUGGUc -3'
miRNA:   3'- -CGGGuGGGGaGaUCCGGaGaUAACCG- -5'
3828 3' -56.5 NC_001650.1 + 130439 0.66 0.915313
Target:  5'- aGUCCgACCCCUaCUcGGCCacgcgcgagagUCUGgucUGGCu -3'
miRNA:   3'- -CGGG-UGGGGA-GAuCCGG-----------AGAUa--ACCG- -5'
3828 3' -56.5 NC_001650.1 + 60128 0.66 0.915313
Target:  5'- cGCuCCGCCCC-CgucGGCCUCUGa---- -3'
miRNA:   3'- -CG-GGUGGGGaGau-CCGGAGAUaaccg -5'
3828 3' -56.5 NC_001650.1 + 36841 0.66 0.915313
Target:  5'- aCCC-CCCCUUacugugGGGCuCUCUAUucUGGa -3'
miRNA:   3'- cGGGuGGGGAGa-----UCCG-GAGAUA--ACCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.