Results 1 - 20 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3828 | 5' | -55.4 | NC_001650.1 | + | 70491 | 0.66 | 0.947304 |
Target: 5'- -cGCCCuggagAGGGGGCUgGUG-GACaCCg -3' miRNA: 3'- caCGGGua---UUUCCCGA-CACgCUGcGG- -5' |
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3828 | 5' | -55.4 | NC_001650.1 | + | 121092 | 0.66 | 0.947304 |
Target: 5'- -cGCCCGUccuGGGGUUccGgGACGCg -3' miRNA: 3'- caCGGGUAuu-UCCCGAcaCgCUGCGg -5' |
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3828 | 5' | -55.4 | NC_001650.1 | + | 62815 | 0.66 | 0.947304 |
Target: 5'- gGUGCUU---GAGGcGCgagGCGGCGCCc -3' miRNA: 3'- -CACGGGuauUUCC-CGacaCGCUGCGG- -5' |
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3828 | 5' | -55.4 | NC_001650.1 | + | 49443 | 0.66 | 0.947304 |
Target: 5'- -cGUCCGUGAggucugccucuGGGGCaucagGgGGCGCCg -3' miRNA: 3'- caCGGGUAUU-----------UCCCGaca--CgCUGCGG- -5' |
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3828 | 5' | -55.4 | NC_001650.1 | + | 50013 | 0.66 | 0.947304 |
Target: 5'- cUGCCCGcgGGGGaGGC-GUGUGugGUg -3' miRNA: 3'- cACGGGUa-UUUC-CCGaCACGCugCGg -5' |
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3828 | 5' | -55.4 | NC_001650.1 | + | 59748 | 0.66 | 0.94288 |
Target: 5'- -gGCCCGUGgcccccGGGGGCga---GGCGCCc -3' miRNA: 3'- caCGGGUAU------UUCCCGacacgCUGCGG- -5' |
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3828 | 5' | -55.4 | NC_001650.1 | + | 52132 | 0.66 | 0.94288 |
Target: 5'- cUGCUUAUAuGGGGuCUGcuuaGUGACGCUu -3' miRNA: 3'- cACGGGUAUuUCCC-GACa---CGCUGCGG- -5' |
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3828 | 5' | -55.4 | NC_001650.1 | + | 131382 | 0.66 | 0.94288 |
Target: 5'- -cGCCCGcucccAGGGCgg-GCagGGCGCCg -3' miRNA: 3'- caCGGGUauu--UCCCGacaCG--CUGCGG- -5' |
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3828 | 5' | -55.4 | NC_001650.1 | + | 131439 | 0.66 | 0.94288 |
Target: 5'- -gGCCCAcgUGcAGGGCguccUG-GACGCCu -3' miRNA: 3'- caCGGGU--AUuUCCCGac--ACgCUGCGG- -5' |
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3828 | 5' | -55.4 | NC_001650.1 | + | 119992 | 0.66 | 0.94288 |
Target: 5'- --cCCCGUAcAGGGGCUGccuguaggGgGGCGCUa -3' miRNA: 3'- cacGGGUAU-UUCCCGACa-------CgCUGCGG- -5' |
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3828 | 5' | -55.4 | NC_001650.1 | + | 144096 | 0.66 | 0.94288 |
Target: 5'- -cGCCCAU------CUGUgGCGACGCCg -3' miRNA: 3'- caCGGGUAuuucccGACA-CGCUGCGG- -5' |
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3828 | 5' | -55.4 | NC_001650.1 | + | 82002 | 0.66 | 0.941967 |
Target: 5'- cGUGUCCcucucgguGGGcCUGUGCGAgagucUGCCc -3' miRNA: 3'- -CACGGGuauuu---CCC-GACACGCU-----GCGG- -5' |
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3828 | 5' | -55.4 | NC_001650.1 | + | 127916 | 0.66 | 0.938221 |
Target: 5'- cGUGCg---GAAcGGGCUGggGCGcGCGCCa -3' miRNA: 3'- -CACGgguaUUU-CCCGACa-CGC-UGCGG- -5' |
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3828 | 5' | -55.4 | NC_001650.1 | + | 31015 | 0.66 | 0.938221 |
Target: 5'- -gGCCUGgcuGGGGCgg-GgGGCGCCc -3' miRNA: 3'- caCGGGUauuUCCCGacaCgCUGCGG- -5' |
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3828 | 5' | -55.4 | NC_001650.1 | + | 23137 | 0.66 | 0.933325 |
Target: 5'- cUGCCCAUAGAcaGGUgGUGCGGgacgGCCu -3' miRNA: 3'- cACGGGUAUUUc-CCGaCACGCUg---CGG- -5' |
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3828 | 5' | -55.4 | NC_001650.1 | + | 51430 | 0.66 | 0.933325 |
Target: 5'- cUGCCCGcgcgcUAcAGGGagaacCUGaGCGugGCCg -3' miRNA: 3'- cACGGGU-----AUuUCCC-----GACaCGCugCGG- -5' |
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3828 | 5' | -55.4 | NC_001650.1 | + | 81188 | 0.66 | 0.928191 |
Target: 5'- -cGUCCAU--GGGGuCUG-GCG-CGCCc -3' miRNA: 3'- caCGGGUAuuUCCC-GACaCGCuGCGG- -5' |
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3828 | 5' | -55.4 | NC_001650.1 | + | 26634 | 0.66 | 0.922819 |
Target: 5'- uUGCCCA---GGGGCgGcGCGGUGCUg -3' miRNA: 3'- cACGGGUauuUCCCGaCaCGCUGCGG- -5' |
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3828 | 5' | -55.4 | NC_001650.1 | + | 61247 | 0.66 | 0.922819 |
Target: 5'- -gGCCaCGUGGAGGGCg--GUGGCcugcuccaGCCg -3' miRNA: 3'- caCGG-GUAUUUCCCGacaCGCUG--------CGG- -5' |
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3828 | 5' | -55.4 | NC_001650.1 | + | 47583 | 0.66 | 0.922819 |
Target: 5'- cUGCCCGcgGAgccucAGGGCgcccCGACGCCc -3' miRNA: 3'- cACGGGUa-UU-----UCCCGacacGCUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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