miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3844 5' -55.8 NC_001650.1 + 178470 0.66 0.946603
Target:  5'- aCCACcgGGACCCccaUgcacucagacccccgUGCCCACAa--- -3'
miRNA:   3'- gGGUGuaCCUGGG---A---------------ACGGGUGUaccu -5'
3844 5' -55.8 NC_001650.1 + 11763 0.66 0.946603
Target:  5'- aCCACcgGGACCCccaUgcacucagacccccgUGCCCACAa--- -3'
miRNA:   3'- gGGUGuaCCUGGG---A---------------ACGGGUGUaccu -5'
3844 5' -55.8 NC_001650.1 + 76686 0.66 0.944865
Target:  5'- aCCCcCGUGG--CCUUGUCgGCGUGGu -3'
miRNA:   3'- -GGGuGUACCugGGAACGGgUGUACCu -5'
3844 5' -55.8 NC_001650.1 + 58097 0.66 0.944865
Target:  5'- gCCCGCcgGGGCCUggGCCgCGaa-GGGu -3'
miRNA:   3'- -GGGUGuaCCUGGGaaCGG-GUguaCCU- -5'
3844 5' -55.8 NC_001650.1 + 107223 0.66 0.944865
Target:  5'- uCCUguACGUGGACCCc-GCCUACAc--- -3'
miRNA:   3'- -GGG--UGUACCUGGGaaCGGGUGUaccu -5'
3844 5' -55.8 NC_001650.1 + 148916 0.66 0.944865
Target:  5'- gCCACAggcgUGuGGCCCUgGCCCGCGc--- -3'
miRNA:   3'- gGGUGU----AC-CUGGGAaCGGGUGUaccu -5'
3844 5' -55.8 NC_001650.1 + 118120 0.66 0.94036
Target:  5'- cCCCGCcaGGugCCc-GCCCACcuUGGGa -3'
miRNA:   3'- -GGGUGuaCCugGGaaCGGGUGu-ACCU- -5'
3844 5' -55.8 NC_001650.1 + 54720 0.66 0.935623
Target:  5'- aCCugGcuuuUGGACCCgugGCUCGCGaccacccaccUGGAu -3'
miRNA:   3'- gGGugU----ACCUGGGaa-CGGGUGU----------ACCU- -5'
3844 5' -55.8 NC_001650.1 + 66663 0.66 0.935623
Target:  5'- gCUACAUGGACgCCgagagcGCCCuGC-UGGAc -3'
miRNA:   3'- gGGUGUACCUG-GGaa----CGGG-UGuACCU- -5'
3844 5' -55.8 NC_001650.1 + 30189 0.66 0.930655
Target:  5'- aCCCGCGaGG-CCCUggggGUCCugAcGGAc -3'
miRNA:   3'- -GGGUGUaCCuGGGAa---CGGGugUaCCU- -5'
3844 5' -55.8 NC_001650.1 + 95344 0.66 0.930655
Target:  5'- uUCCAgGcGGACUCgggguugGCCCACAUGa- -3'
miRNA:   3'- -GGGUgUaCCUGGGaa-----CGGGUGUACcu -5'
3844 5' -55.8 NC_001650.1 + 166368 0.66 0.930655
Target:  5'- aCCCAUaAUGcauuuuGACCCUUGCCCAacaucCAUGu- -3'
miRNA:   3'- -GGGUG-UAC------CUGGGAACGGGU-----GUACcu -5'
3844 5' -55.8 NC_001650.1 + 22496 0.66 0.925453
Target:  5'- cCCgGCAUGGGCCCcgccucgagGCCCcacagcuucACcgGGGc -3'
miRNA:   3'- -GGgUGUACCUGGGaa-------CGGG---------UGuaCCU- -5'
3844 5' -55.8 NC_001650.1 + 52747 0.67 0.920018
Target:  5'- uCCCGCGcGGACCCgauccUGCUgGCGcGGu -3'
miRNA:   3'- -GGGUGUaCCUGGGa----ACGGgUGUaCCu -5'
3844 5' -55.8 NC_001650.1 + 41435 0.67 0.920018
Target:  5'- cCCCGucUGGGCCCggccgccGCCCugG-GGAa -3'
miRNA:   3'- -GGGUguACCUGGGaa-----CGGGugUaCCU- -5'
3844 5' -55.8 NC_001650.1 + 25810 0.67 0.91435
Target:  5'- gUCCAgagGUGGACCCUgggaggggcgGCCCAgAggGGAg -3'
miRNA:   3'- -GGGUg--UACCUGGGAa---------CGGGUgUa-CCU- -5'
3844 5' -55.8 NC_001650.1 + 156452 0.67 0.91377
Target:  5'- uCgCACAUGGGCguguuggCCgcggUGCCCACguagGUGGGc -3'
miRNA:   3'- -GgGUGUACCUG-------GGa---ACGGGUG----UACCU- -5'
3844 5' -55.8 NC_001650.1 + 48427 0.67 0.902322
Target:  5'- gCCAUGguggGGGCCCUgGCCUuucagaGCAUGGc -3'
miRNA:   3'- gGGUGUa---CCUGGGAaCGGG------UGUACCu -5'
3844 5' -55.8 NC_001650.1 + 128411 0.67 0.902322
Target:  5'- -gCACAUGGACaccaCCUaucUGCCCgACcUGGAg -3'
miRNA:   3'- ggGUGUACCUG----GGA---ACGGG-UGuACCU- -5'
3844 5' -55.8 NC_001650.1 + 117645 0.67 0.902322
Target:  5'- gCCUGCAU-GACCCUgacCCCggGCGUGGGg -3'
miRNA:   3'- -GGGUGUAcCUGGGAac-GGG--UGUACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.