miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3861 5' -58.7 NC_001650.1 + 81192 0.66 0.837177
Target:  5'- gGGCCacguaGCCCaCGUgGAUguucUCCACGGAGg -3'
miRNA:   3'- aCCGGa----UGGG-GCGgUUA----GGGUGUCUC- -5'
3861 5' -58.7 NC_001650.1 + 26214 0.66 0.820783
Target:  5'- gUGGCCUcggGCUacgaggaCGCCG--UCCACGGAGa -3'
miRNA:   3'- -ACCGGA---UGGg------GCGGUuaGGGUGUCUC- -5'
3861 5' -58.7 NC_001650.1 + 52880 0.66 0.812337
Target:  5'- gGGCC--CCCgGCCGGgcccaCCCGCGGGu -3'
miRNA:   3'- aCCGGauGGGgCGGUUa----GGGUGUCUc -5'
3861 5' -58.7 NC_001650.1 + 117042 0.66 0.837177
Target:  5'- cUGGCCgccGCCCUGCgGAUCugauCCuCGGGGc -3'
miRNA:   3'- -ACCGGa--UGGGGCGgUUAG----GGuGUCUC- -5'
3861 5' -58.7 NC_001650.1 + 166191 0.66 0.828245
Target:  5'- gUGaGCCcACCCCaccccgcGCCAccaCCACAGAGu -3'
miRNA:   3'- -AC-CGGaUGGGG-------CGGUuagGGUGUCUC- -5'
3861 5' -58.7 NC_001650.1 + 59959 0.66 0.812337
Target:  5'- aGGUUcagGCCCCGCUccagGGUCagCCGCAGGGc -3'
miRNA:   3'- aCCGGa--UGGGGCGG----UUAG--GGUGUCUC- -5'
3861 5' -58.7 NC_001650.1 + 81639 0.66 0.845112
Target:  5'- gGGCCagcucCCCCGUCAcgUUCGCGGGc -3'
miRNA:   3'- aCCGGau---GGGGCGGUuaGGGUGUCUc -5'
3861 5' -58.7 NC_001650.1 + 157427 0.66 0.829065
Target:  5'- -uGCCUGCCCUGgUcg-CCCACGGGc -3'
miRNA:   3'- acCGGAUGGGGCgGuuaGGGUGUCUc -5'
3861 5' -58.7 NC_001650.1 + 127915 0.66 0.820783
Target:  5'- gGGCCUuCCCCGagggccuguuCCuGUCCCACGu-- -3'
miRNA:   3'- aCCGGAuGGGGC----------GGuUAGGGUGUcuc -5'
3861 5' -58.7 NC_001650.1 + 115075 0.66 0.848234
Target:  5'- aGGCgCUcgcGCCCCugagggccaagauaGCCGAgaaccuggucgccuUCCCACAGAc -3'
miRNA:   3'- aCCG-GA---UGGGG--------------CGGUU--------------AGGGUGUCUc -5'
3861 5' -58.7 NC_001650.1 + 93858 0.66 0.845112
Target:  5'- gGGCUggACCagGCUcuucguGUCCCACAGGGa -3'
miRNA:   3'- aCCGGa-UGGggCGGu-----UAGGGUGUCUC- -5'
3861 5' -58.7 NC_001650.1 + 51148 0.66 0.803735
Target:  5'- gGGCC--CCCgGUCAuagugCCCGCGGGGc -3'
miRNA:   3'- aCCGGauGGGgCGGUua---GGGUGUCUC- -5'
3861 5' -58.7 NC_001650.1 + 19361 0.66 0.803735
Target:  5'- gGGCCUcccauccucccGCCCCauaGCUGGUCUCugGGAc -3'
miRNA:   3'- aCCGGA-----------UGGGG---CGGUUAGGGugUCUc -5'
3861 5' -58.7 NC_001650.1 + 22566 0.66 0.820783
Target:  5'- aGGCCUGCCUguCGCCcGUCCgggGCGGcGg -3'
miRNA:   3'- aCCGGAUGGG--GCGGuUAGGg--UGUCuC- -5'
3861 5' -58.7 NC_001650.1 + 119836 0.66 0.837177
Target:  5'- cGGCgU-CCgCGCCcagCCCGCAGAc -3'
miRNA:   3'- aCCGgAuGGgGCGGuuaGGGUGUCUc -5'
3861 5' -58.7 NC_001650.1 + 120813 0.66 0.820783
Target:  5'- aGGUCU-CCCUGCCcaagCCCAaccccCAGAGc -3'
miRNA:   3'- aCCGGAuGGGGCGGuua-GGGU-----GUCUC- -5'
3861 5' -58.7 NC_001650.1 + 32247 0.66 0.812337
Target:  5'- gUGGCUgaaacgaccACCCCGUucgCAA-CCCACAGAc -3'
miRNA:   3'- -ACCGGa--------UGGGGCG---GUUaGGGUGUCUc -5'
3861 5' -58.7 NC_001650.1 + 83384 0.66 0.803735
Target:  5'- gGGCCgagGCCCUGCCGucgguaCCAgCuGAGg -3'
miRNA:   3'- aCCGGa--UGGGGCGGUuag---GGU-GuCUC- -5'
3861 5' -58.7 NC_001650.1 + 182958 0.66 0.807194
Target:  5'- gUGGCCUGCCCacugaccucaugugGCCcg-CCCAUuGGGg -3'
miRNA:   3'- -ACCGGAUGGGg-------------CGGuuaGGGUGuCUC- -5'
3861 5' -58.7 NC_001650.1 + 16251 0.66 0.807194
Target:  5'- gUGGCCUGCCCacugaccucaugugGCCcg-CCCAUuGGGg -3'
miRNA:   3'- -ACCGGAUGGGg-------------CGGuuaGGGUGuCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.