Results 1 - 20 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3861 | 5' | -58.7 | NC_001650.1 | + | 25082 | 1.09 | 0.001885 |
Target: 5'- aUGGCCUACCCCGCCAAUCCCACAGAGa -3' miRNA: 3'- -ACCGGAUGGGGCGGUUAGGGUGUCUC- -5' |
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3861 | 5' | -58.7 | NC_001650.1 | + | 27546 | 0.79 | 0.196156 |
Target: 5'- cUGGCCUGCCUgGCCGAgCCCACccaaaaGGAGa -3' miRNA: 3'- -ACCGGAUGGGgCGGUUaGGGUG------UCUC- -5' |
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3861 | 5' | -58.7 | NC_001650.1 | + | 95475 | 0.78 | 0.243302 |
Target: 5'- cGGCCUGCCCCGCUug-CCgGcCGGGGg -3' miRNA: 3'- aCCGGAUGGGGCGGuuaGGgU-GUCUC- -5' |
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3861 | 5' | -58.7 | NC_001650.1 | + | 60108 | 0.77 | 0.254983 |
Target: 5'- cUGGCCcgaCCCGCCg--CCCGCGGAGg -3' miRNA: 3'- -ACCGGaugGGGCGGuuaGGGUGUCUC- -5' |
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3861 | 5' | -58.7 | NC_001650.1 | + | 8943 | 0.76 | 0.292789 |
Target: 5'- gGGCCUAaCCCCGgCAc-CCCGCAGGGc -3' miRNA: 3'- aCCGGAU-GGGGCgGUuaGGGUGUCUC- -5' |
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3861 | 5' | -58.7 | NC_001650.1 | + | 175649 | 0.76 | 0.292789 |
Target: 5'- gGGCCUAaCCCCGgCAc-CCCGCAGGGc -3' miRNA: 3'- aCCGGAU-GGGGCgGUuaGGGUGUCUC- -5' |
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3861 | 5' | -58.7 | NC_001650.1 | + | 153386 | 0.75 | 0.320344 |
Target: 5'- aUGGUgUGCCCCGCCAGcacgCUCAgGGAGc -3' miRNA: 3'- -ACCGgAUGGGGCGGUUa---GGGUgUCUC- -5' |
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3861 | 5' | -58.7 | NC_001650.1 | + | 103703 | 0.74 | 0.373121 |
Target: 5'- aGGCCU-CCCCGUCccaccacacGAgcuugCCCACGGAGg -3' miRNA: 3'- aCCGGAuGGGGCGG---------UUa----GGGUGUCUC- -5' |
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3861 | 5' | -58.7 | NC_001650.1 | + | 73050 | 0.74 | 0.397479 |
Target: 5'- gGGCCUGacugggaCCCGCCucacacccUCCCugAGAGg -3' miRNA: 3'- aCCGGAUg------GGGCGGuu------AGGGugUCUC- -5' |
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3861 | 5' | -58.7 | NC_001650.1 | + | 62173 | 0.73 | 0.414275 |
Target: 5'- gGGCCaGCCCCGCCGcGUCCUcgaaggcgaACAGGa -3' miRNA: 3'- aCCGGaUGGGGCGGU-UAGGG---------UGUCUc -5' |
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3861 | 5' | -58.7 | NC_001650.1 | + | 82411 | 0.73 | 0.422835 |
Target: 5'- cUGGCCaAgCCCGCCAA-CUgGCAGGGg -3' miRNA: 3'- -ACCGGaUgGGGCGGUUaGGgUGUCUC- -5' |
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3861 | 5' | -58.7 | NC_001650.1 | + | 147732 | 0.73 | 0.448246 |
Target: 5'- cUGGcCCUGCCCC-CCGGUCCCugccugaACAGGu -3' miRNA: 3'- -ACC-GGAUGGGGcGGUUAGGG-------UGUCUc -5' |
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3861 | 5' | -58.7 | NC_001650.1 | + | 71655 | 0.73 | 0.449138 |
Target: 5'- gUGGCCUACaggGCCA--CCCACAGGGg -3' miRNA: 3'- -ACCGGAUGgggCGGUuaGGGUGUCUC- -5' |
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3861 | 5' | -58.7 | NC_001650.1 | + | 12724 | 0.72 | 0.467166 |
Target: 5'- aGGCCUACCCC-UCGAgCCCcggccuggauuuGCAGAGg -3' miRNA: 3'- aCCGGAUGGGGcGGUUaGGG------------UGUCUC- -5' |
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3861 | 5' | -58.7 | NC_001650.1 | + | 179431 | 0.72 | 0.467166 |
Target: 5'- aGGCCUACCCC-UCGAgCCCcggccuggauuuGCAGAGg -3' miRNA: 3'- aCCGGAUGGGGcGGUUaGGG------------UGUCUC- -5' |
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3861 | 5' | -58.7 | NC_001650.1 | + | 148951 | 0.72 | 0.467166 |
Target: 5'- cGGCCcGCCCCGCCcacccgcgCuCCACAGGc -3' miRNA: 3'- aCCGGaUGGGGCGGuua-----G-GGUGUCUc -5' |
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3861 | 5' | -58.7 | NC_001650.1 | + | 119020 | 0.72 | 0.467166 |
Target: 5'- uUGGCCUccaggucccACCCCGCCGAgaUCUugAGGGu -3' miRNA: 3'- -ACCGGA---------UGGGGCGGUUa-GGGugUCUC- -5' |
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3861 | 5' | -58.7 | NC_001650.1 | + | 89923 | 0.72 | 0.476318 |
Target: 5'- aGGCCccagACCCCGCgGguAUCCUGCGGGa -3' miRNA: 3'- aCCGGa---UGGGGCGgU--UAGGGUGUCUc -5' |
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3861 | 5' | -58.7 | NC_001650.1 | + | 48272 | 0.72 | 0.494885 |
Target: 5'- cGGCUaGCCCC-CUAG-CCCACAGGGc -3' miRNA: 3'- aCCGGaUGGGGcGGUUaGGGUGUCUC- -5' |
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3861 | 5' | -58.7 | NC_001650.1 | + | 130496 | 0.72 | 0.504291 |
Target: 5'- aGGCCcugcugccccugUGCCCCGCC--UCCCucaAGAGg -3' miRNA: 3'- aCCGG------------AUGGGGCGGuuAGGGug-UCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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