miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3861 5' -58.7 NC_001650.1 + 101886 0.69 0.64167
Target:  5'- gGGCg-GCUUCGCCAuccagacggagaGUCCCAUGGAGg -3'
miRNA:   3'- aCCGgaUGGGGCGGU------------UAGGGUGUCUC- -5'
3861 5' -58.7 NC_001650.1 + 135898 0.71 0.532951
Target:  5'- gGGCCUcugCCCGCCccUCCCugAGAa -3'
miRNA:   3'- aCCGGAug-GGGCGGuuAGGGugUCUc -5'
3861 5' -58.7 NC_001650.1 + 128590 0.71 0.562172
Target:  5'- gGGCCcaccGCCCCGCCGAgCCCGugaccCAGGu -3'
miRNA:   3'- aCCGGa---UGGGGCGGUUaGGGU-----GUCUc -5'
3861 5' -58.7 NC_001650.1 + 22498 0.71 0.572012
Target:  5'- cGGCauggGCCCCGCCucgaggcCCCACAGc- -3'
miRNA:   3'- aCCGga--UGGGGCGGuua----GGGUGUCuc -5'
3861 5' -58.7 NC_001650.1 + 121275 0.7 0.590815
Target:  5'- cGGCCUGCUCCaacaagaGCCAccuGUCCCcgcccgagAUAGAGg -3'
miRNA:   3'- aCCGGAUGGGG-------CGGU---UAGGG--------UGUCUC- -5'
3861 5' -58.7 NC_001650.1 + 1446 0.7 0.591808
Target:  5'- aGGCCgGCCCC-CCGGcUCCCAUuggccgGGAGg -3'
miRNA:   3'- aCCGGaUGGGGcGGUU-AGGGUG------UCUC- -5'
3861 5' -58.7 NC_001650.1 + 168153 0.7 0.591808
Target:  5'- aGGCCgGCCCC-CCGGcUCCCAUuggccgGGAGg -3'
miRNA:   3'- aCCGGaUGGGGcGGUU-AGGGUG------UCUC- -5'
3861 5' -58.7 NC_001650.1 + 56393 0.7 0.601752
Target:  5'- gGGCCgcCCUCGCUcuUCCCcgcuagGCAGAGa -3'
miRNA:   3'- aCCGGauGGGGCGGuuAGGG------UGUCUC- -5'
3861 5' -58.7 NC_001650.1 + 129263 0.7 0.621696
Target:  5'- gUGGCCcgcuCCgCCGCCAAgggcgCCCAgaAGAGg -3'
miRNA:   3'- -ACCGGau--GG-GGCGGUUa----GGGUg-UCUC- -5'
3861 5' -58.7 NC_001650.1 + 156085 0.71 0.523329
Target:  5'- aGGCCUcgaggACCCCgGCCAGguugCCCAgGGGc -3'
miRNA:   3'- aCCGGA-----UGGGG-CGGUUa---GGGUgUCUc -5'
3861 5' -58.7 NC_001650.1 + 130496 0.72 0.504291
Target:  5'- aGGCCcugcugccccugUGCCCCGCC--UCCCucaAGAGg -3'
miRNA:   3'- aCCGG------------AUGGGGCGGuuAGGGug-UCUC- -5'
3861 5' -58.7 NC_001650.1 + 48272 0.72 0.494885
Target:  5'- cGGCUaGCCCC-CUAG-CCCACAGGGc -3'
miRNA:   3'- aCCGGaUGGGGcGGUUaGGGUGUCUC- -5'
3861 5' -58.7 NC_001650.1 + 27546 0.79 0.196156
Target:  5'- cUGGCCUGCCUgGCCGAgCCCACccaaaaGGAGa -3'
miRNA:   3'- -ACCGGAUGGGgCGGUUaGGGUG------UCUC- -5'
3861 5' -58.7 NC_001650.1 + 60108 0.77 0.254983
Target:  5'- cUGGCCcgaCCCGCCg--CCCGCGGAGg -3'
miRNA:   3'- -ACCGGaugGGGCGGuuaGGGUGUCUC- -5'
3861 5' -58.7 NC_001650.1 + 8943 0.76 0.292789
Target:  5'- gGGCCUAaCCCCGgCAc-CCCGCAGGGc -3'
miRNA:   3'- aCCGGAU-GGGGCgGUuaGGGUGUCUC- -5'
3861 5' -58.7 NC_001650.1 + 175649 0.76 0.292789
Target:  5'- gGGCCUAaCCCCGgCAc-CCCGCAGGGc -3'
miRNA:   3'- aCCGGAU-GGGGCgGUuaGGGUGUCUC- -5'
3861 5' -58.7 NC_001650.1 + 82411 0.73 0.422835
Target:  5'- cUGGCCaAgCCCGCCAA-CUgGCAGGGg -3'
miRNA:   3'- -ACCGGaUgGGGCGGUUaGGgUGUCUC- -5'
3861 5' -58.7 NC_001650.1 + 71655 0.73 0.449138
Target:  5'- gUGGCCUACaggGCCA--CCCACAGGGg -3'
miRNA:   3'- -ACCGGAUGgggCGGUuaGGGUGUCUC- -5'
3861 5' -58.7 NC_001650.1 + 119020 0.72 0.467166
Target:  5'- uUGGCCUccaggucccACCCCGCCGAgaUCUugAGGGu -3'
miRNA:   3'- -ACCGGA---------UGGGGCGGUUa-GGGugUCUC- -5'
3861 5' -58.7 NC_001650.1 + 89923 0.72 0.476318
Target:  5'- aGGCCccagACCCCGCgGguAUCCUGCGGGa -3'
miRNA:   3'- aCCGGa---UGGGGCGgU--UAGGGUGUCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.