miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3861 5' -58.7 NC_001650.1 + 1446 0.7 0.591808
Target:  5'- aGGCCgGCCCC-CCGGcUCCCAUuggccgGGAGg -3'
miRNA:   3'- aCCGGaUGGGGcGGUU-AGGGUG------UCUC- -5'
3861 5' -58.7 NC_001650.1 + 2320 0.69 0.661616
Target:  5'- cGGCCUcaACCCCGCgA--CCCcCAGAc -3'
miRNA:   3'- aCCGGA--UGGGGCGgUuaGGGuGUCUc -5'
3861 5' -58.7 NC_001650.1 + 2669 0.7 0.598766
Target:  5'- cGGCCggcugcacaggaaauCCCCGCCGGUCCaaggucaaAUAGGGu -3'
miRNA:   3'- aCCGGau-------------GGGGCGGUUAGGg-------UGUCUC- -5'
3861 5' -58.7 NC_001650.1 + 3646 0.67 0.777075
Target:  5'- gGGCCgACCCC-CCG-UCCCcgucACGGGGc -3'
miRNA:   3'- aCCGGaUGGGGcGGUuAGGG----UGUCUC- -5'
3861 5' -58.7 NC_001650.1 + 8943 0.76 0.292789
Target:  5'- gGGCCUAaCCCCGgCAc-CCCGCAGGGc -3'
miRNA:   3'- aCCGGAU-GGGGCgGUuaGGGUGUCUC- -5'
3861 5' -58.7 NC_001650.1 + 12724 0.72 0.467166
Target:  5'- aGGCCUACCCC-UCGAgCCCcggccuggauuuGCAGAGg -3'
miRNA:   3'- aCCGGAUGGGGcGGUUaGGG------------UGUCUC- -5'
3861 5' -58.7 NC_001650.1 + 16251 0.66 0.807194
Target:  5'- gUGGCCUGCCCacugaccucaugugGCCcg-CCCAUuGGGg -3'
miRNA:   3'- -ACCGGAUGGGg-------------CGGuuaGGGUGuCUC- -5'
3861 5' -58.7 NC_001650.1 + 19361 0.66 0.803735
Target:  5'- gGGCCUcccauccucccGCCCCauaGCUGGUCUCugGGAc -3'
miRNA:   3'- aCCGGA-----------UGGGG---CGGUUAGGGugUCUc -5'
3861 5' -58.7 NC_001650.1 + 22498 0.71 0.572012
Target:  5'- cGGCauggGCCCCGCCucgaggcCCCACAGc- -3'
miRNA:   3'- aCCGga--UGGGGCGGuua----GGGUGUCuc -5'
3861 5' -58.7 NC_001650.1 + 22566 0.66 0.820783
Target:  5'- aGGCCUGCCUguCGCCcGUCCgggGCGGcGg -3'
miRNA:   3'- aCCGGAUGGG--GCGGuUAGGg--UGUCuC- -5'
3861 5' -58.7 NC_001650.1 + 25082 1.09 0.001885
Target:  5'- aUGGCCUACCCCGCCAAUCCCACAGAGa -3'
miRNA:   3'- -ACCGGAUGGGGCGGUUAGGGUGUCUC- -5'
3861 5' -58.7 NC_001650.1 + 26214 0.66 0.820783
Target:  5'- gUGGCCUcggGCUacgaggaCGCCG--UCCACGGAGa -3'
miRNA:   3'- -ACCGGA---UGGg------GCGGUuaGGGUGUCUC- -5'
3861 5' -58.7 NC_001650.1 + 26382 0.68 0.730284
Target:  5'- cUGGCCaccUGCCCCGUCAGUaugcugaCCACGuccagguucauGAGg -3'
miRNA:   3'- -ACCGG---AUGGGGCGGUUAg------GGUGU-----------CUC- -5'
3861 5' -58.7 NC_001650.1 + 27546 0.79 0.196156
Target:  5'- cUGGCCUGCCUgGCCGAgCCCACccaaaaGGAGa -3'
miRNA:   3'- -ACCGGAUGGGgCGGUUaGGGUG------UCUC- -5'
3861 5' -58.7 NC_001650.1 + 32247 0.66 0.812337
Target:  5'- gUGGCUgaaacgaccACCCCGUucgCAA-CCCACAGAc -3'
miRNA:   3'- -ACCGGa--------UGGGGCG---GUUaGGGUGUCUc -5'
3861 5' -58.7 NC_001650.1 + 37902 0.69 0.671559
Target:  5'- aUGGCCgaggACCCCGCCuacgcgCCCAgCAc-- -3'
miRNA:   3'- -ACCGGa---UGGGGCGGuua---GGGU-GUcuc -5'
3861 5' -58.7 NC_001650.1 + 38052 0.67 0.749303
Target:  5'- cGGaCCUGCCCC-CCGAcgaCCUgugACAGAGu -3'
miRNA:   3'- aCC-GGAUGGGGcGGUUa--GGG---UGUCUC- -5'
3861 5' -58.7 NC_001650.1 + 38820 0.66 0.845112
Target:  5'- gGGCUaccACCCCcacgcgGCCAucCCCAUGGAGa -3'
miRNA:   3'- aCCGGa--UGGGG------CGGUuaGGGUGUCUC- -5'
3861 5' -58.7 NC_001650.1 + 45110 0.67 0.777075
Target:  5'- cGGCUUGCggCCGCgGuUCCCAgGGAGc -3'
miRNA:   3'- aCCGGAUGg-GGCGgUuAGGGUgUCUC- -5'
3861 5' -58.7 NC_001650.1 + 45226 0.69 0.681471
Target:  5'- gGGCUcACCCCcaaaGCCAGgcgcCCCACAGuAGc -3'
miRNA:   3'- aCCGGaUGGGG----CGGUUa---GGGUGUC-UC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.