miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
388 5' -51.8 AC_000011.1 + 30304 0.66 0.788179
Target:  5'- -aCUGC--UAGUACCAAUGaGCAGACu -3'
miRNA:   3'- gcGAUGuuGUCGUGGUUGCaCGUCUG- -5'
388 5' -51.8 AC_000011.1 + 11744 0.66 0.788179
Target:  5'- cCGCaACGACAggauGCACCGugcggugaGCGccaGCAGGCg -3'
miRNA:   3'- -GCGaUGUUGU----CGUGGU--------UGCa--CGUCUG- -5'
388 5' -51.8 AC_000011.1 + 14095 0.66 0.785023
Target:  5'- uCGCUgaacuaccagaacgACcACAGCaacuuccugaccACCGugGUGCAGAa -3'
miRNA:   3'- -GCGA--------------UGuUGUCG------------UGGUugCACGUCUg -5'
388 5' -51.8 AC_000011.1 + 11137 0.66 0.777598
Target:  5'- aCGCgggGCGGgAGCugCGGCGcgGCcuGGACc -3'
miRNA:   3'- -GCGa--UGUUgUCGugGUUGCa-CG--UCUG- -5'
388 5' -51.8 AC_000011.1 + 16673 0.66 0.766846
Target:  5'- gCGCUugGGCaccaucAGCugCAugGUGgGGuACa -3'
miRNA:   3'- -GCGAugUUG------UCGugGUugCACgUC-UG- -5'
388 5' -51.8 AC_000011.1 + 12624 0.66 0.765761
Target:  5'- gGCUuucaagaACuuGCAGgGCCuguggGGCGUGCAGGCc -3'
miRNA:   3'- gCGA-------UGu-UGUCgUGG-----UUGCACGUCUG- -5'
388 5' -51.8 AC_000011.1 + 8235 0.66 0.760317
Target:  5'- aCGCUGCGgagucaggucaguggGCAGCGgCGGCGcGCGGu- -3'
miRNA:   3'- -GCGAUGU---------------UGUCGUgGUUGCaCGUCug -5'
388 5' -51.8 AC_000011.1 + 25150 0.66 0.755935
Target:  5'- gGUUGCAGCGGCAgUGGCacucgaGCAGGCc -3'
miRNA:   3'- gCGAUGUUGUCGUgGUUGca----CGUCUG- -5'
388 5' -51.8 AC_000011.1 + 22091 0.66 0.744882
Target:  5'- uGCUGCAACcccguGUACCGcaacucccGCGcGCAGAa -3'
miRNA:   3'- gCGAUGUUGu----CGUGGU--------UGCaCGUCUg -5'
388 5' -51.8 AC_000011.1 + 23101 0.66 0.733698
Target:  5'- -uCUugGGCGGCAgCGGCG-GCGGAg -3'
miRNA:   3'- gcGAugUUGUCGUgGUUGCaCGUCUg -5'
388 5' -51.8 AC_000011.1 + 23742 0.67 0.699507
Target:  5'- gCGCUGCucGACcGCACCGAgGUGCc--- -3'
miRNA:   3'- -GCGAUG--UUGuCGUGGUUgCACGucug -5'
388 5' -51.8 AC_000011.1 + 22084 0.67 0.687943
Target:  5'- aCGCU-CGcCAGCACCGucGCGUcGguGAUg -3'
miRNA:   3'- -GCGAuGUuGUCGUGGU--UGCA-CguCUG- -5'
388 5' -51.8 AC_000011.1 + 22453 0.67 0.676317
Target:  5'- aGCUggccaacaACGACGcGCGCUgcuGCGUGCAcGACg -3'
miRNA:   3'- gCGA--------UGUUGU-CGUGGu--UGCACGU-CUG- -5'
388 5' -51.8 AC_000011.1 + 30877 0.68 0.664645
Target:  5'- uGCUACAGCAGCagauGCagGugGUGaAGGCa -3'
miRNA:   3'- gCGAUGUUGUCG----UGg-UugCACgUCUG- -5'
388 5' -51.8 AC_000011.1 + 33875 0.68 0.664645
Target:  5'- aCGgaGCGGCGGCGgCAGCGacugcUGCGGGg -3'
miRNA:   3'- -GCgaUGUUGUCGUgGUUGC-----ACGUCUg -5'
388 5' -51.8 AC_000011.1 + 8968 0.68 0.651765
Target:  5'- aGUUGCAGaGGCGCUguagagguaguugAGCGUGguGGCg -3'
miRNA:   3'- gCGAUGUUgUCGUGG-------------UUGCACguCUG- -5'
388 5' -51.8 AC_000011.1 + 14843 0.68 0.641208
Target:  5'- gCGCcGCAGCAGUGgCAGCG-GCcgAGGCg -3'
miRNA:   3'- -GCGaUGUUGUCGUgGUUGCaCG--UCUG- -5'
388 5' -51.8 AC_000011.1 + 18125 0.68 0.641208
Target:  5'- gCGCgcggGCcACGGcCACCGGCG-GCAGGg -3'
miRNA:   3'- -GCGa---UGuUGUC-GUGGUUGCaCGUCUg -5'
388 5' -51.8 AC_000011.1 + 11534 0.69 0.571043
Target:  5'- -uCUGCAG-AGCAUCGugGUGCAGGa -3'
miRNA:   3'- gcGAUGUUgUCGUGGUugCACGUCUg -5'
388 5' -51.8 AC_000011.1 + 8577 0.7 0.547997
Target:  5'- cCGCgc--GCGGCGCCGACGUGCc--- -3'
miRNA:   3'- -GCGauguUGUCGUGGUUGCACGucug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.