Results 1 - 20 of 32 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
388 | 5' | -51.8 | AC_000011.1 | + | 30304 | 0.66 | 0.788179 |
Target: 5'- -aCUGC--UAGUACCAAUGaGCAGACu -3' miRNA: 3'- gcGAUGuuGUCGUGGUUGCaCGUCUG- -5' |
|||||||
388 | 5' | -51.8 | AC_000011.1 | + | 11744 | 0.66 | 0.788179 |
Target: 5'- cCGCaACGACAggauGCACCGugcggugaGCGccaGCAGGCg -3' miRNA: 3'- -GCGaUGUUGU----CGUGGU--------UGCa--CGUCUG- -5' |
|||||||
388 | 5' | -51.8 | AC_000011.1 | + | 14095 | 0.66 | 0.785023 |
Target: 5'- uCGCUgaacuaccagaacgACcACAGCaacuuccugaccACCGugGUGCAGAa -3' miRNA: 3'- -GCGA--------------UGuUGUCG------------UGGUugCACGUCUg -5' |
|||||||
388 | 5' | -51.8 | AC_000011.1 | + | 11137 | 0.66 | 0.777598 |
Target: 5'- aCGCgggGCGGgAGCugCGGCGcgGCcuGGACc -3' miRNA: 3'- -GCGa--UGUUgUCGugGUUGCa-CG--UCUG- -5' |
|||||||
388 | 5' | -51.8 | AC_000011.1 | + | 16673 | 0.66 | 0.766846 |
Target: 5'- gCGCUugGGCaccaucAGCugCAugGUGgGGuACa -3' miRNA: 3'- -GCGAugUUG------UCGugGUugCACgUC-UG- -5' |
|||||||
388 | 5' | -51.8 | AC_000011.1 | + | 12624 | 0.66 | 0.765761 |
Target: 5'- gGCUuucaagaACuuGCAGgGCCuguggGGCGUGCAGGCc -3' miRNA: 3'- gCGA-------UGu-UGUCgUGG-----UUGCACGUCUG- -5' |
|||||||
388 | 5' | -51.8 | AC_000011.1 | + | 8235 | 0.66 | 0.760317 |
Target: 5'- aCGCUGCGgagucaggucaguggGCAGCGgCGGCGcGCGGu- -3' miRNA: 3'- -GCGAUGU---------------UGUCGUgGUUGCaCGUCug -5' |
|||||||
388 | 5' | -51.8 | AC_000011.1 | + | 25150 | 0.66 | 0.755935 |
Target: 5'- gGUUGCAGCGGCAgUGGCacucgaGCAGGCc -3' miRNA: 3'- gCGAUGUUGUCGUgGUUGca----CGUCUG- -5' |
|||||||
388 | 5' | -51.8 | AC_000011.1 | + | 22091 | 0.66 | 0.744882 |
Target: 5'- uGCUGCAACcccguGUACCGcaacucccGCGcGCAGAa -3' miRNA: 3'- gCGAUGUUGu----CGUGGU--------UGCaCGUCUg -5' |
|||||||
388 | 5' | -51.8 | AC_000011.1 | + | 23101 | 0.66 | 0.733698 |
Target: 5'- -uCUugGGCGGCAgCGGCG-GCGGAg -3' miRNA: 3'- gcGAugUUGUCGUgGUUGCaCGUCUg -5' |
|||||||
388 | 5' | -51.8 | AC_000011.1 | + | 23742 | 0.67 | 0.699507 |
Target: 5'- gCGCUGCucGACcGCACCGAgGUGCc--- -3' miRNA: 3'- -GCGAUG--UUGuCGUGGUUgCACGucug -5' |
|||||||
388 | 5' | -51.8 | AC_000011.1 | + | 22084 | 0.67 | 0.687943 |
Target: 5'- aCGCU-CGcCAGCACCGucGCGUcGguGAUg -3' miRNA: 3'- -GCGAuGUuGUCGUGGU--UGCA-CguCUG- -5' |
|||||||
388 | 5' | -51.8 | AC_000011.1 | + | 22453 | 0.67 | 0.676317 |
Target: 5'- aGCUggccaacaACGACGcGCGCUgcuGCGUGCAcGACg -3' miRNA: 3'- gCGA--------UGUUGU-CGUGGu--UGCACGU-CUG- -5' |
|||||||
388 | 5' | -51.8 | AC_000011.1 | + | 30877 | 0.68 | 0.664645 |
Target: 5'- uGCUACAGCAGCagauGCagGugGUGaAGGCa -3' miRNA: 3'- gCGAUGUUGUCG----UGg-UugCACgUCUG- -5' |
|||||||
388 | 5' | -51.8 | AC_000011.1 | + | 33875 | 0.68 | 0.664645 |
Target: 5'- aCGgaGCGGCGGCGgCAGCGacugcUGCGGGg -3' miRNA: 3'- -GCgaUGUUGUCGUgGUUGC-----ACGUCUg -5' |
|||||||
388 | 5' | -51.8 | AC_000011.1 | + | 8968 | 0.68 | 0.651765 |
Target: 5'- aGUUGCAGaGGCGCUguagagguaguugAGCGUGguGGCg -3' miRNA: 3'- gCGAUGUUgUCGUGG-------------UUGCACguCUG- -5' |
|||||||
388 | 5' | -51.8 | AC_000011.1 | + | 14843 | 0.68 | 0.641208 |
Target: 5'- gCGCcGCAGCAGUGgCAGCG-GCcgAGGCg -3' miRNA: 3'- -GCGaUGUUGUCGUgGUUGCaCG--UCUG- -5' |
|||||||
388 | 5' | -51.8 | AC_000011.1 | + | 18125 | 0.68 | 0.641208 |
Target: 5'- gCGCgcggGCcACGGcCACCGGCG-GCAGGg -3' miRNA: 3'- -GCGa---UGuUGUC-GUGGUUGCaCGUCUg -5' |
|||||||
388 | 5' | -51.8 | AC_000011.1 | + | 11534 | 0.69 | 0.571043 |
Target: 5'- -uCUGCAG-AGCAUCGugGUGCAGGa -3' miRNA: 3'- gcGAUGUUgUCGUGGUugCACGUCUg -5' |
|||||||
388 | 5' | -51.8 | AC_000011.1 | + | 8577 | 0.7 | 0.547997 |
Target: 5'- cCGCgc--GCGGCGCCGACGUGCc--- -3' miRNA: 3'- -GCGauguUGUCGUGGUUGCACGucug -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home