miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3885 5' -51.8 NC_001650.1 + 73487 0.66 0.98619
Target:  5'- gGCugCUggGGC-UGCugAGGCUguuGCUGCUg -3'
miRNA:   3'- -UGugGA--UCGaACGugUCUGG---UGAUGG- -5'
3885 5' -51.8 NC_001650.1 + 110604 0.66 0.992834
Target:  5'- gGCGCuCUcggcguuguagGGCUcGCACgAGACCACgcacgagGCCc -3'
miRNA:   3'- -UGUG-GA-----------UCGAaCGUG-UCUGGUGa------UGG- -5'
3885 5' -51.8 NC_001650.1 + 65686 0.66 0.989258
Target:  5'- uGCGCUcGGCaggGCuCAGGCagaGCUACCu -3'
miRNA:   3'- -UGUGGaUCGaa-CGuGUCUGg--UGAUGG- -5'
3885 5' -51.8 NC_001650.1 + 3786 0.66 0.991767
Target:  5'- -aACCUGuGUgUUGUGCaAGACCcACUACCa -3'
miRNA:   3'- ugUGGAU-CG-AACGUG-UCUGG-UGAUGG- -5'
3885 5' -51.8 NC_001650.1 + 169228 0.66 0.990578
Target:  5'- -gGCCaaugaAGCgucGCGCGGGCCGCgcguUGCCa -3'
miRNA:   3'- ugUGGa----UCGaa-CGUGUCUGGUG----AUGG- -5'
3885 5' -51.8 NC_001650.1 + 95422 0.66 0.987798
Target:  5'- cACGCC-AGCU--CGCAGuCCACggGCCu -3'
miRNA:   3'- -UGUGGaUCGAacGUGUCuGGUGa-UGG- -5'
3885 5' -51.8 NC_001650.1 + 90537 0.66 0.989258
Target:  5'- aGCGCCcAGUUgugGUugAGGuCCACgUACCu -3'
miRNA:   3'- -UGUGGaUCGAa--CGugUCU-GGUG-AUGG- -5'
3885 5' -51.8 NC_001650.1 + 125543 0.66 0.989258
Target:  5'- uGCGCCgcguccAGCgugGCgaggaccaggGCGGACCACcACCu -3'
miRNA:   3'- -UGUGGa-----UCGaa-CG----------UGUCUGGUGaUGG- -5'
3885 5' -51.8 NC_001650.1 + 2521 0.66 0.990578
Target:  5'- -gGCCaaugaAGCgucGCGCGGGCCGCgcguUGCCa -3'
miRNA:   3'- ugUGGa----UCGaa-CGUGUCUGGUG----AUGG- -5'
3885 5' -51.8 NC_001650.1 + 75375 0.66 0.98602
Target:  5'- -gACCUGGgUgggcagcUGCACGGcCCGCUcCCa -3'
miRNA:   3'- ugUGGAUCgA-------ACGUGUCuGGUGAuGG- -5'
3885 5' -51.8 NC_001650.1 + 41497 0.66 0.991767
Target:  5'- gGCGCCUGGuCUcgGC-CGcGCCGCcGCCg -3'
miRNA:   3'- -UGUGGAUC-GAa-CGuGUcUGGUGaUGG- -5'
3885 5' -51.8 NC_001650.1 + 54575 0.66 0.992834
Target:  5'- -gACCUGGCUuuUGgACccccGGCaCGCUACCc -3'
miRNA:   3'- ugUGGAUCGA--ACgUGu---CUG-GUGAUGG- -5'
3885 5' -51.8 NC_001650.1 + 101217 0.66 0.98619
Target:  5'- aGCGCCU-GCUcgugUGCACGGAcagguucuucuCCACggGCUg -3'
miRNA:   3'- -UGUGGAuCGA----ACGUGUCU-----------GGUGa-UGG- -5'
3885 5' -51.8 NC_001650.1 + 70286 0.66 0.989258
Target:  5'- uCGCCcaUGGCgacggGCGCAGGCC-C-ACCa -3'
miRNA:   3'- uGUGG--AUCGaa---CGUGUCUGGuGaUGG- -5'
3885 5' -51.8 NC_001650.1 + 130474 0.66 0.989258
Target:  5'- --gUCUGGC-UGCACAGgACCuucaaggcccuGCUGCCc -3'
miRNA:   3'- uguGGAUCGaACGUGUC-UGG-----------UGAUGG- -5'
3885 5' -51.8 NC_001650.1 + 51515 0.66 0.989258
Target:  5'- uCGCCgAGCUgGCcCAG-CCACUgGCCa -3'
miRNA:   3'- uGUGGaUCGAaCGuGUCuGGUGA-UGG- -5'
3885 5' -51.8 NC_001650.1 + 157559 0.66 0.989258
Target:  5'- aGCGCCUccuguggcAGCUUggagagGUACAGcACCGC-GCCg -3'
miRNA:   3'- -UGUGGA--------UCGAA------CGUGUC-UGGUGaUGG- -5'
3885 5' -51.8 NC_001650.1 + 96890 0.66 0.990578
Target:  5'- -aACCUgggugGGCUcGCACAG-CCAggACCa -3'
miRNA:   3'- ugUGGA-----UCGAaCGUGUCuGGUgaUGG- -5'
3885 5' -51.8 NC_001650.1 + 122844 0.66 0.990578
Target:  5'- gACGCCUucauagagAGCcUGCAgCAGcCCAUcGCCa -3'
miRNA:   3'- -UGUGGA--------UCGaACGU-GUCuGGUGaUGG- -5'
3885 5' -51.8 NC_001650.1 + 108822 0.66 0.991767
Target:  5'- -aACCUGGCccGCgcgugggaGCGGGCCgugcaGCUGCCc -3'
miRNA:   3'- ugUGGAUCGaaCG--------UGUCUGG-----UGAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.