miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3885 5' -51.8 NC_001650.1 + 2521 0.66 0.990578
Target:  5'- -gGCCaaugaAGCgucGCGCGGGCCGCgcguUGCCa -3'
miRNA:   3'- ugUGGa----UCGaa-CGUGUCUGGUG----AUGG- -5'
3885 5' -51.8 NC_001650.1 + 3786 0.66 0.991767
Target:  5'- -aACCUGuGUgUUGUGCaAGACCcACUACCa -3'
miRNA:   3'- ugUGGAU-CG-AACGUG-UCUGG-UGAUGG- -5'
3885 5' -51.8 NC_001650.1 + 12744 0.69 0.956262
Target:  5'- -gGCCUGGaUUUGCAgAGGCCuACcgGCCu -3'
miRNA:   3'- ugUGGAUC-GAACGUgUCUGG-UGa-UGG- -5'
3885 5' -51.8 NC_001650.1 + 19819 0.67 0.976623
Target:  5'- cGCGCCUgucucucaGGCUgggcgaguucugcaGCGCGGACCAC-ACUc -3'
miRNA:   3'- -UGUGGA--------UCGAa-------------CGUGUCUGGUGaUGG- -5'
3885 5' -51.8 NC_001650.1 + 26358 0.68 0.970031
Target:  5'- aACAcCCUGGUgUGCACcuccacccuGGCCACcUGCCc -3'
miRNA:   3'- -UGU-GGAUCGaACGUGu--------CUGGUG-AUGG- -5'
3885 5' -51.8 NC_001650.1 + 26635 0.67 0.98249
Target:  5'- -uGCCcaggGGCg-GCGCGGugCugUACCu -3'
miRNA:   3'- ugUGGa---UCGaaCGUGUCugGugAUGG- -5'
3885 5' -51.8 NC_001650.1 + 35289 0.67 0.984423
Target:  5'- -gGCCggGGaCggGCGCGGGCCAggGCCa -3'
miRNA:   3'- ugUGGa-UC-GaaCGUGUCUGGUgaUGG- -5'
3885 5' -51.8 NC_001650.1 + 41324 0.71 0.904939
Target:  5'- cGCGCC-GGC-UGCACGGGCCGggGCg -3'
miRNA:   3'- -UGUGGaUCGaACGUGUCUGGUgaUGg -5'
3885 5' -51.8 NC_001650.1 + 41497 0.66 0.991767
Target:  5'- gGCGCCUGGuCUcgGC-CGcGCCGCcGCCg -3'
miRNA:   3'- -UGUGGAUC-GAa-CGuGUcUGGUGaUGG- -5'
3885 5' -51.8 NC_001650.1 + 42596 0.8 0.441251
Target:  5'- -gACCUAGCuUUGguCAGACCAUUACUg -3'
miRNA:   3'- ugUGGAUCG-AACguGUCUGGUGAUGG- -5'
3885 5' -51.8 NC_001650.1 + 42726 1.13 0.004309
Target:  5'- gACACCUAGCUUGCACAGACCACUACCa -3'
miRNA:   3'- -UGUGGAUCGAACGUGUCUGGUGAUGG- -5'
3885 5' -51.8 NC_001650.1 + 44537 0.67 0.984237
Target:  5'- uGCACCUAGCUUuuuggaccagGCACuGAaaccCCAUacuggcuUGCCg -3'
miRNA:   3'- -UGUGGAUCGAA----------CGUGuCU----GGUG-------AUGG- -5'
3885 5' -51.8 NC_001650.1 + 44599 0.7 0.927379
Target:  5'- uGCACCUcGCgucuggacccgGCACGGACCuCUgGCCu -3'
miRNA:   3'- -UGUGGAuCGaa---------CGUGUCUGGuGA-UGG- -5'
3885 5' -51.8 NC_001650.1 + 44804 0.66 0.990578
Target:  5'- -gGCCUAGCUUcCucuuuacCGGACCACUAg- -3'
miRNA:   3'- ugUGGAUCGAAcGu------GUCUGGUGAUgg -5'
3885 5' -51.8 NC_001650.1 + 46629 0.67 0.98249
Target:  5'- uACACCaGGCUgaaccUGCuCA-ACUACUGCCa -3'
miRNA:   3'- -UGUGGaUCGA-----ACGuGUcUGGUGAUGG- -5'
3885 5' -51.8 NC_001650.1 + 47871 0.68 0.962558
Target:  5'- uCACCc-GC-UGCGCGGACCuguccugcuucgccACUACCu -3'
miRNA:   3'- uGUGGauCGaACGUGUCUGG--------------UGAUGG- -5'
3885 5' -51.8 NC_001650.1 + 47935 0.71 0.891695
Target:  5'- aACAUCUGGCUcuuUGCugGGugCGugGCCa -3'
miRNA:   3'- -UGUGGAUCGA---ACGugUCugGUgaUGG- -5'
3885 5' -51.8 NC_001650.1 + 48610 0.7 0.92846
Target:  5'- gGCGCCaGGCUagcuguggugUGCGCcgagugcGGCUACUGCCu -3'
miRNA:   3'- -UGUGGaUCGA----------ACGUGu------CUGGUGAUGG- -5'
3885 5' -51.8 NC_001650.1 + 48971 0.68 0.972922
Target:  5'- cUACCUgacugAGCUggGCcCGGGCCugUACUg -3'
miRNA:   3'- uGUGGA-----UCGAa-CGuGUCUGGugAUGG- -5'
3885 5' -51.8 NC_001650.1 + 51135 0.72 0.838082
Target:  5'- uGCACCUGGCUcGcCGCcGGCCGCgGCUu -3'
miRNA:   3'- -UGUGGAUCGAaC-GUGuCUGGUGaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.