miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3885 5' -51.8 NC_001650.1 + 42726 1.13 0.004309
Target:  5'- gACACCUAGCUUGCACAGACCACUACCa -3'
miRNA:   3'- -UGUGGAUCGAACGUGUCUGGUGAUGG- -5'
3885 5' -51.8 NC_001650.1 + 162222 0.85 0.230478
Target:  5'- uAUACCUAGCUUGCGCccauGGACCACUAa- -3'
miRNA:   3'- -UGUGGAUCGAACGUG----UCUGGUGAUgg -5'
3885 5' -51.8 NC_001650.1 + 42596 0.8 0.441251
Target:  5'- -gACCUAGCuUUGguCAGACCAUUACUg -3'
miRNA:   3'- ugUGGAUCG-AACguGUCUGGUGAUGG- -5'
3885 5' -51.8 NC_001650.1 + 59103 0.74 0.755521
Target:  5'- -uGCCUGGC-UGUuCGGGCCGCUgACCg -3'
miRNA:   3'- ugUGGAUCGaACGuGUCUGGUGA-UGG- -5'
3885 5' -51.8 NC_001650.1 + 121935 0.73 0.793774
Target:  5'- uGCGCCcgAGUUcGCGCGGGCCguGCUGCUc -3'
miRNA:   3'- -UGUGGa-UCGAaCGUGUCUGG--UGAUGG- -5'
3885 5' -51.8 NC_001650.1 + 73140 0.73 0.800233
Target:  5'- cGCGCCUGGCgccGCugGagccccugggguagGGCCugUACCa -3'
miRNA:   3'- -UGUGGAUCGaa-CGugU--------------CUGGugAUGG- -5'
3885 5' -51.8 NC_001650.1 + 153620 0.73 0.802065
Target:  5'- gGCACCU-GCcUGCACAcgugguugcaguuGACCGCgGCCa -3'
miRNA:   3'- -UGUGGAuCGaACGUGU-------------CUGGUGaUGG- -5'
3885 5' -51.8 NC_001650.1 + 132024 0.73 0.81202
Target:  5'- uGCACCU-GCUcuacGCGCuGGCCGCgGCCg -3'
miRNA:   3'- -UGUGGAuCGAa---CGUGuCUGGUGaUGG- -5'
3885 5' -51.8 NC_001650.1 + 51135 0.72 0.838082
Target:  5'- uGCACCUGGCUcGcCGCcGGCCGCgGCUu -3'
miRNA:   3'- -UGUGGAUCGAaC-GUGuCUGGUGaUGG- -5'
3885 5' -51.8 NC_001650.1 + 141656 0.72 0.854488
Target:  5'- aGCACCccAGCcuucaGCAGAUCACUACCu -3'
miRNA:   3'- -UGUGGa-UCGaacg-UGUCUGGUGAUGG- -5'
3885 5' -51.8 NC_001650.1 + 55160 0.72 0.854488
Target:  5'- -aGCCUGGCggggucGCGCGcGGCCACcGCCu -3'
miRNA:   3'- ugUGGAUCGaa----CGUGU-CUGGUGaUGG- -5'
3885 5' -51.8 NC_001650.1 + 94401 0.71 0.884713
Target:  5'- cUACCUGGaCgcGCugAGGCgGCUGCCc -3'
miRNA:   3'- uGUGGAUC-GaaCGugUCUGgUGAUGG- -5'
3885 5' -51.8 NC_001650.1 + 47935 0.71 0.891695
Target:  5'- aACAUCUGGCUcuuUGCugGGugCGugGCCa -3'
miRNA:   3'- -UGUGGAUCGA---ACGugUCugGUgaUGG- -5'
3885 5' -51.8 NC_001650.1 + 73019 0.71 0.891695
Target:  5'- -uGCCUGGgg-GCGCGGGCCGCcugaGCCg -3'
miRNA:   3'- ugUGGAUCgaaCGUGUCUGGUGa---UGG- -5'
3885 5' -51.8 NC_001650.1 + 73695 0.71 0.898439
Target:  5'- cGCGCCc-GC-UGCugAGGCUGCUGCUg -3'
miRNA:   3'- -UGUGGauCGaACGugUCUGGUGAUGG- -5'
3885 5' -51.8 NC_001650.1 + 41324 0.71 0.904939
Target:  5'- cGCGCC-GGC-UGCACGGGCCGggGCg -3'
miRNA:   3'- -UGUGGaUCGaACGUGUCUGGUgaUGg -5'
3885 5' -51.8 NC_001650.1 + 141530 0.71 0.904939
Target:  5'- -aACUUAGCUUccCACGGACCACUAa- -3'
miRNA:   3'- ugUGGAUCGAAc-GUGUCUGGUGAUgg -5'
3885 5' -51.8 NC_001650.1 + 61935 0.7 0.922955
Target:  5'- cGCGCCgcgggGGCgUGCAgGGACCugUAg- -3'
miRNA:   3'- -UGUGGa----UCGaACGUgUCUGGugAUgg -5'
3885 5' -51.8 NC_001650.1 + 44599 0.7 0.927379
Target:  5'- uGCACCUcGCgucuggacccgGCACGGACCuCUgGCCu -3'
miRNA:   3'- -UGUGGAuCGaa---------CGUGUCUGGuGA-UGG- -5'
3885 5' -51.8 NC_001650.1 + 79091 0.7 0.92846
Target:  5'- -gGCCUGGCUccggGCGCGG-CCGCUcgGCg -3'
miRNA:   3'- ugUGGAUCGAa---CGUGUCuGGUGA--UGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.