miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3885 5' -51.8 NC_001650.1 + 120912 0.67 0.97809
Target:  5'- aGCACCgccgcgAGCUgcgcGCGCuGGCCAagaGCCu -3'
miRNA:   3'- -UGUGGa-----UCGAa---CGUGuCUGGUga-UGG- -5'
3885 5' -51.8 NC_001650.1 + 73457 0.69 0.943471
Target:  5'- gGCACCU-GCUgaaCGCGGGCUucgcCUGCCa -3'
miRNA:   3'- -UGUGGAuCGAac-GUGUCUGGu---GAUGG- -5'
3885 5' -51.8 NC_001650.1 + 98900 0.69 0.956262
Target:  5'- uCAUCUGGCUUGauaaACAGcACCuCUAUCu -3'
miRNA:   3'- uGUGGAUCGAACg---UGUC-UGGuGAUGG- -5'
3885 5' -51.8 NC_001650.1 + 115199 0.68 0.970031
Target:  5'- -gACCUcacaaagucaGGCcUGCACAGGCC-CgGCCg -3'
miRNA:   3'- ugUGGA----------UCGaACGUGUCUGGuGaUGG- -5'
3885 5' -51.8 NC_001650.1 + 131604 0.68 0.972922
Target:  5'- cCACCgccAGUggGCGCAG-CUGCUGCUg -3'
miRNA:   3'- uGUGGa--UCGaaCGUGUCuGGUGAUGG- -5'
3885 5' -51.8 NC_001650.1 + 109662 0.67 0.975606
Target:  5'- aACuuCCUGGUcUGC-CAGACCcagcagcaGCUGCCc -3'
miRNA:   3'- -UGu-GGAUCGaACGuGUCUGG--------UGAUGG- -5'
3885 5' -51.8 NC_001650.1 + 87150 0.67 0.97809
Target:  5'- cACAgCUGGCUguUGCGCgAGAUguagCACUGCg -3'
miRNA:   3'- -UGUgGAUCGA--ACGUG-UCUG----GUGAUGg -5'
3885 5' -51.8 NC_001650.1 + 89156 0.67 0.97809
Target:  5'- cCGCCUGGCggaCAgGGuCCugUGCCc -3'
miRNA:   3'- uGUGGAUCGaacGUgUCuGGugAUGG- -5'
3885 5' -51.8 NC_001650.1 + 66491 0.67 0.97809
Target:  5'- cGCAguCCUcgAGCUUGCaccGCAGGCCcCggACCg -3'
miRNA:   3'- -UGU--GGA--UCGAACG---UGUCUGGuGa-UGG- -5'
3885 5' -51.8 NC_001650.1 + 60272 0.69 0.943471
Target:  5'- cCGCCggcuGCUgcgGCugAGGCCGCUgggcggcggGCCu -3'
miRNA:   3'- uGUGGau--CGAa--CGugUCUGGUGA---------UGG- -5'
3885 5' -51.8 NC_001650.1 + 76647 0.69 0.943471
Target:  5'- cGCGCCUucucggcccccAGgaUGUACauGGGCCACUGCa -3'
miRNA:   3'- -UGUGGA-----------UCgaACGUG--UCUGGUGAUGg -5'
3885 5' -51.8 NC_001650.1 + 156590 0.69 0.938717
Target:  5'- gACGCCcAGCUcgGCgcagaacucccuGCAGGCCAUcACCg -3'
miRNA:   3'- -UGUGGaUCGAa-CG------------UGUCUGGUGaUGG- -5'
3885 5' -51.8 NC_001650.1 + 162222 0.85 0.230478
Target:  5'- uAUACCUAGCUUGCGCccauGGACCACUAa- -3'
miRNA:   3'- -UGUGGAUCGAACGUG----UCUGGUGAUgg -5'
3885 5' -51.8 NC_001650.1 + 42596 0.8 0.441251
Target:  5'- -gACCUAGCuUUGguCAGACCAUUACUg -3'
miRNA:   3'- ugUGGAUCG-AACguGUCUGGUGAUGG- -5'
3885 5' -51.8 NC_001650.1 + 121935 0.73 0.793774
Target:  5'- uGCGCCcgAGUUcGCGCGGGCCguGCUGCUc -3'
miRNA:   3'- -UGUGGa-UCGAaCGUGUCUGG--UGAUGG- -5'
3885 5' -51.8 NC_001650.1 + 132024 0.73 0.81202
Target:  5'- uGCACCU-GCUcuacGCGCuGGCCGCgGCCg -3'
miRNA:   3'- -UGUGGAuCGAa---CGUGuCUGGUGaUGG- -5'
3885 5' -51.8 NC_001650.1 + 94401 0.71 0.884713
Target:  5'- cUACCUGGaCgcGCugAGGCgGCUGCCc -3'
miRNA:   3'- uGUGGAUC-GaaCGugUCUGgUGAUGG- -5'
3885 5' -51.8 NC_001650.1 + 47935 0.71 0.891695
Target:  5'- aACAUCUGGCUcuuUGCugGGugCGugGCCa -3'
miRNA:   3'- -UGUGGAUCGA---ACGugUCugGUgaUGG- -5'
3885 5' -51.8 NC_001650.1 + 79091 0.7 0.92846
Target:  5'- -gGCCUGGCUccggGCGCGG-CCGCUcgGCg -3'
miRNA:   3'- ugUGGAUCGAa---CGUGUCuGGUGA--UGg -5'
3885 5' -51.8 NC_001650.1 + 135230 0.69 0.938717
Target:  5'- gACACCUGGagcaGUACAGGCCcggGCCc -3'
miRNA:   3'- -UGUGGAUCgaa-CGUGUCUGGugaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.