miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
394 5' -48.6 AC_000011.1 + 21572 0.66 0.932283
Target:  5'- gGGCGGUcgggccagUGCAcgaAGCGUgcaggaacaUGCAGCa -3'
miRNA:   3'- -CCGCUAuuaaa---ACGU---UCGCG---------GCGUCG- -5'
394 5' -48.6 AC_000011.1 + 28473 0.66 0.927441
Target:  5'- aGCGGUGAUU-----AGCGCCGU-GCa -3'
miRNA:   3'- cCGCUAUUAAaacguUCGCGGCGuCG- -5'
394 5' -48.6 AC_000011.1 + 25084 0.66 0.921094
Target:  5'- aGGCcaGGUAGUUggcCAGGCGCaGCAGg -3'
miRNA:   3'- -CCG--CUAUUAAaacGUUCGCGgCGUCg -5'
394 5' -48.6 AC_000011.1 + 10586 0.66 0.921094
Target:  5'- aGGCcgGAUGAgacuaGUAAGCGCggaaaGCGGCc -3'
miRNA:   3'- -CCG--CUAUUaaaa-CGUUCGCGg----CGUCG- -5'
394 5' -48.6 AC_000011.1 + 21745 0.66 0.921094
Target:  5'- aGGCGGUGGccuucuCGAuGCGCgCGCGGUg -3'
miRNA:   3'- -CCGCUAUUaaaac-GUU-CGCG-GCGUCG- -5'
394 5' -48.6 AC_000011.1 + 33986 0.66 0.921094
Target:  5'- aGCGAgaucc--GCAuGCGCUGCuGCg -3'
miRNA:   3'- cCGCUauuaaaaCGUuCGCGGCGuCG- -5'
394 5' -48.6 AC_000011.1 + 17360 0.66 0.914422
Target:  5'- cGGCGAUGAUgggGaucAGCGCgGgCAGg -3'
miRNA:   3'- -CCGCUAUUAaaaCgu-UCGCGgC-GUCg -5'
394 5' -48.6 AC_000011.1 + 8949 0.66 0.914422
Target:  5'- uGGCGcgugaagaccgcGUAGU--UGCAgaGGCGCUGUAGa -3'
miRNA:   3'- -CCGC------------UAUUAaaACGU--UCGCGGCGUCg -5'
394 5' -48.6 AC_000011.1 + 16437 0.66 0.914422
Target:  5'- gGGCGA--GUUUgcuuacgGCAAGCgcaGCCGUuccGCa -3'
miRNA:   3'- -CCGCUauUAAAa------CGUUCG---CGGCGu--CG- -5'
394 5' -48.6 AC_000011.1 + 5296 0.66 0.910263
Target:  5'- aGCGcacccuc-GCAAGCGCC-CAGCc -3'
miRNA:   3'- cCGCuauuaaaaCGUUCGCGGcGUCG- -5'
394 5' -48.6 AC_000011.1 + 23907 0.66 0.907426
Target:  5'- aGGCGcgGGUUgggcucGCAGGUGCCauuggGCuGGCg -3'
miRNA:   3'- -CCGCuaUUAAaa----CGUUCGCGG-----CG-UCG- -5'
394 5' -48.6 AC_000011.1 + 75 0.66 0.907426
Target:  5'- gGGCGGUGAUUggucgaggGaUGAGCGaCCGUuaggGGCg -3'
miRNA:   3'- -CCGCUAUUAAaa------C-GUUCGC-GGCG----UCG- -5'
394 5' -48.6 AC_000011.1 + 34021 0.66 0.907426
Target:  5'- uGGUGGUucuGUgUUGCAcGUaCUGCAGCg -3'
miRNA:   3'- -CCGCUAu--UAaAACGUuCGcGGCGUCG- -5'
394 5' -48.6 AC_000011.1 + 18381 0.66 0.906709
Target:  5'- cGGCGAUG----UGCAuguaCGCCcacugggGCAGCa -3'
miRNA:   3'- -CCGCUAUuaaaACGUuc--GCGG-------CGUCG- -5'
394 5' -48.6 AC_000011.1 + 15588 0.66 0.903808
Target:  5'- uGGCGAgcgccuccguacaucUUGCuGGCGCgCGCAGg -3'
miRNA:   3'- -CCGCUauuaa----------AACGuUCGCG-GCGUCg -5'
394 5' -48.6 AC_000011.1 + 10262 0.67 0.90011
Target:  5'- cGGCGGUGG---UGgAGGCG-CGCGGg -3'
miRNA:   3'- -CCGCUAUUaaaACgUUCGCgGCGUCg -5'
394 5' -48.6 AC_000011.1 + 13342 0.67 0.892477
Target:  5'- cGGCGcUGuccggccGCGAGggugcUGCCGCGGCg -3'
miRNA:   3'- -CCGCuAUuaaaa--CGUUC-----GCGGCGUCG- -5'
394 5' -48.6 AC_000011.1 + 21953 0.67 0.892477
Target:  5'- cGCGcag---UUGCAgGGCGCC-CAGCa -3'
miRNA:   3'- cCGCuauuaaAACGU-UCGCGGcGUCG- -5'
394 5' -48.6 AC_000011.1 + 2273 0.67 0.892477
Target:  5'- gGGUcuGAUGAguc-GCAAGCGCC-CAGa -3'
miRNA:   3'- -CCG--CUAUUaaaaCGUUCGCGGcGUCg -5'
394 5' -48.6 AC_000011.1 + 9286 0.67 0.884533
Target:  5'- uGGCGGggGAggggGCcuGCGUCGcCGGCg -3'
miRNA:   3'- -CCGCUa-UUaaaaCGuuCGCGGC-GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.