miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3978 3' -63.3 NC_001650.1 + 50639 0.66 0.681049
Target:  5'- aUGCGcccccuCGAGGG-GCcGGUGCCCGcGGg -3'
miRNA:   3'- gGCGCc-----GCUCCCuCGaCCACGGGC-UC- -5'
3978 3' -63.3 NC_001650.1 + 50289 0.66 0.681049
Target:  5'- gCgGCGGCGGGGGAGaC-GGcgagcGCCCa-- -3'
miRNA:   3'- -GgCGCCGCUCCCUC-GaCCa----CGGGcuc -5'
3978 3' -63.3 NC_001650.1 + 147671 0.66 0.681049
Target:  5'- gCGCGGCc-GGGAGCcgcucUGGgggguaccUGCUCGGGg -3'
miRNA:   3'- gGCGCCGcuCCCUCG-----ACC--------ACGGGCUC- -5'
3978 3' -63.3 NC_001650.1 + 43502 0.66 0.671561
Target:  5'- aUG-GGUGAGGGAgGCUGGcGCCaguGAGc -3'
miRNA:   3'- gGCgCCGCUCCCU-CGACCaCGGg--CUC- -5'
3978 3' -63.3 NC_001650.1 + 159529 0.66 0.671561
Target:  5'- gCUGUGGaCcAGGGcGCUGGUgagcgcGUCCGAGg -3'
miRNA:   3'- -GGCGCC-GcUCCCuCGACCA------CGGGCUC- -5'
3978 3' -63.3 NC_001650.1 + 126204 0.66 0.671561
Target:  5'- aCCGCGGCGGGGcGGCgGGcgagGagCGAGu -3'
miRNA:   3'- -GGCGCCGCUCCcUCGaCCa---CggGCUC- -5'
3978 3' -63.3 NC_001650.1 + 129558 0.66 0.662046
Target:  5'- -aGCGGCG-GGG-GCUGcaGUGCUgGGGc -3'
miRNA:   3'- ggCGCCGCuCCCuCGAC--CACGGgCUC- -5'
3978 3' -63.3 NC_001650.1 + 26955 0.66 0.658233
Target:  5'- gUGCGcGUGGGGGAGUgcgacgccuuuaaGGUGCCCc-- -3'
miRNA:   3'- gGCGC-CGCUCCCUCGa------------CCACGGGcuc -5'
3978 3' -63.3 NC_001650.1 + 110721 0.66 0.65251
Target:  5'- -gGUGGCGAGcuGGccguGGCUGaG-GCCCGGGg -3'
miRNA:   3'- ggCGCCGCUC--CC----UCGAC-CaCGGGCUC- -5'
3978 3' -63.3 NC_001650.1 + 57934 0.66 0.6506
Target:  5'- gCGCGGcCGGGGGcggcacccucAGCUGGgcgggaggcgcgGCCgGGGc -3'
miRNA:   3'- gGCGCC-GCUCCC----------UCGACCa-----------CGGgCUC- -5'
3978 3' -63.3 NC_001650.1 + 159689 0.66 0.642959
Target:  5'- gCGCGGCcAGGGGGUaGGgGCagCCGGGc -3'
miRNA:   3'- gGCGCCGcUCCCUCGaCCaCG--GGCUC- -5'
3978 3' -63.3 NC_001650.1 + 28673 0.66 0.642959
Target:  5'- gCGCGGCcAGGGAgaccguGCUGGUuuuCCUGAa -3'
miRNA:   3'- gGCGCCGcUCCCU------CGACCAc--GGGCUc -5'
3978 3' -63.3 NC_001650.1 + 83642 0.66 0.642959
Target:  5'- -gGCgGGUGAGGGAcGCggccggcgGGUGCgaCGAGg -3'
miRNA:   3'- ggCG-CCGCUCCCU-CGa-------CCACGg-GCUC- -5'
3978 3' -63.3 NC_001650.1 + 69219 0.66 0.642959
Target:  5'- cUCGUGcGCGcGGGcGCUGGagGCCgGGGg -3'
miRNA:   3'- -GGCGC-CGCuCCCuCGACCa-CGGgCUC- -5'
3978 3' -63.3 NC_001650.1 + 159608 0.66 0.642959
Target:  5'- -gGCGGCGGGGGcGgUGG-GCaaGGGg -3'
miRNA:   3'- ggCGCCGCUCCCuCgACCaCGggCUC- -5'
3978 3' -63.3 NC_001650.1 + 108556 0.66 0.642959
Target:  5'- gCCGCGGCuGGGGGAGgaGGggGagCGGa -3'
miRNA:   3'- -GGCGCCG-CUCCCUCgaCCa-CggGCUc -5'
3978 3' -63.3 NC_001650.1 + 28442 0.66 0.633401
Target:  5'- -gGCGGCGGguGGGGGC-GGccgugcugugccUGCCCGGc -3'
miRNA:   3'- ggCGCCGCU--CCCUCGaCC------------ACGGGCUc -5'
3978 3' -63.3 NC_001650.1 + 120873 0.66 0.633401
Target:  5'- aCGCGGCGGcgcuGGGGGC-GGcGCgCGAc -3'
miRNA:   3'- gGCGCCGCU----CCCUCGaCCaCGgGCUc -5'
3978 3' -63.3 NC_001650.1 + 78101 0.66 0.632445
Target:  5'- aCGUGuGCGAcGGGGGCgacgagugcauagUGGUGaacaCCGGGg -3'
miRNA:   3'- gGCGC-CGCU-CCCUCG-------------ACCACg---GGCUC- -5'
3978 3' -63.3 NC_001650.1 + 70490 0.66 0.623842
Target:  5'- aCGCccuGGaGAGGGGGCUGGUGgacaCCGuGc -3'
miRNA:   3'- gGCG---CCgCUCCCUCGACCACg---GGCuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.