miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3978 5' -56.6 NC_001650.1 + 111251 0.66 0.885585
Target:  5'- cUGCCCCA-GGGCcagaaucuggggCCUCGCCcGCAg- -3'
miRNA:   3'- -ACGGGGUgCUCGa-----------GGAGUGGuUGUag -5'
3978 5' -56.6 NC_001650.1 + 127710 0.66 0.880031
Target:  5'- cGCCCUgcacaccauagACaAGCUCaUCACCAacACAUCa -3'
miRNA:   3'- aCGGGG-----------UGcUCGAGgAGUGGU--UGUAG- -5'
3978 5' -56.6 NC_001650.1 + 100977 0.66 0.880031
Target:  5'- ---aCCACGAGUgCCUCAUCAACGc- -3'
miRNA:   3'- acggGGUGCUCGaGGAGUGGUUGUag -5'
3978 5' -56.6 NC_001650.1 + 128683 0.66 0.880031
Target:  5'- cGCaggCCAcCGAGCgcaUCCUgGCCGACGUg -3'
miRNA:   3'- aCGg--GGU-GCUCG---AGGAgUGGUUGUAg -5'
3978 5' -56.6 NC_001650.1 + 35516 0.66 0.912379
Target:  5'- gUGCCCgAgGGGCUCaagcuggacuuuCUCAuCCAGCAg- -3'
miRNA:   3'- -ACGGGgUgCUCGAG------------GAGU-GGUUGUag -5'
3978 5' -56.6 NC_001650.1 + 27795 0.66 0.900124
Target:  5'- cUGUgCCGCG-GCUCCUgcccgGCCAgcuGCGUCa -3'
miRNA:   3'- -ACGgGGUGCuCGAGGAg----UGGU---UGUAG- -5'
3978 5' -56.6 NC_001650.1 + 50883 0.66 0.900124
Target:  5'- cGCCCCGCuucGAGCggggggCUUCugCAAgGUg -3'
miRNA:   3'- aCGGGGUG---CUCGa-----GGAGugGUUgUAg -5'
3978 5' -56.6 NC_001650.1 + 73582 0.66 0.880031
Target:  5'- aGCCCCAgGGGCagggCCUCgugCGugGUCu -3'
miRNA:   3'- aCGGGGUgCUCGa---GGAGug-GUugUAG- -5'
3978 5' -56.6 NC_001650.1 + 62656 0.66 0.886952
Target:  5'- aGCCCCugGGGCaUCCcacguucgugCACCggUAc- -3'
miRNA:   3'- aCGGGGugCUCG-AGGa---------GUGGuuGUag -5'
3978 5' -56.6 NC_001650.1 + 88022 0.66 0.912379
Target:  5'- uUGCCCgGauGGCUCuCUCGCCG--GUCa -3'
miRNA:   3'- -ACGGGgUgcUCGAG-GAGUGGUugUAG- -5'
3978 5' -56.6 NC_001650.1 + 122937 0.66 0.89365
Target:  5'- cG-CCCACGGGgUCCUgGCgGACcUCg -3'
miRNA:   3'- aCgGGGUGCUCgAGGAgUGgUUGuAG- -5'
3978 5' -56.6 NC_001650.1 + 111075 0.66 0.89365
Target:  5'- -aCCCCAgGGGCUCCagcggCGCCAggcGCGa- -3'
miRNA:   3'- acGGGGUgCUCGAGGa----GUGGU---UGUag -5'
3978 5' -56.6 NC_001650.1 + 59519 0.66 0.886952
Target:  5'- cUGCCCuCGCGca-UCCUCAUgAGCAUa -3'
miRNA:   3'- -ACGGG-GUGCucgAGGAGUGgUUGUAg -5'
3978 5' -56.6 NC_001650.1 + 142128 0.66 0.900124
Target:  5'- gGCUCCugGAGCacUCCUU-CCAGCc-- -3'
miRNA:   3'- aCGGGGugCUCG--AGGAGuGGUUGuag -5'
3978 5' -56.6 NC_001650.1 + 74039 0.66 0.89365
Target:  5'- cGCCCC-CGuGCaCUUCaACCAGCAccUCa -3'
miRNA:   3'- aCGGGGuGCuCGaGGAG-UGGUUGU--AG- -5'
3978 5' -56.6 NC_001650.1 + 71578 0.66 0.900124
Target:  5'- cGgCgCACGAGCUCCUCAaacUgGAgGUCc -3'
miRNA:   3'- aCgGgGUGCUCGAGGAGU---GgUUgUAG- -5'
3978 5' -56.6 NC_001650.1 + 99247 0.66 0.898847
Target:  5'- cGCCCC-CGccaucgcccucCUCCUCACCuucgccgugGACAUCg -3'
miRNA:   3'- aCGGGGuGCuc---------GAGGAGUGG---------UUGUAG- -5'
3978 5' -56.6 NC_001650.1 + 121576 0.66 0.880031
Target:  5'- aUGCCCCAggggcucggggcUGGGCUCC-CGCCugUGUUu -3'
miRNA:   3'- -ACGGGGU------------GCUCGAGGaGUGGuuGUAG- -5'
3978 5' -56.6 NC_001650.1 + 136230 0.66 0.89365
Target:  5'- gGCCCCG-GGGCguagUCCUgCGCCAucuugguCAUCa -3'
miRNA:   3'- aCGGGGUgCUCG----AGGA-GUGGUu------GUAG- -5'
3978 5' -56.6 NC_001650.1 + 134883 0.66 0.912379
Target:  5'- cGUgCCACaGAGCUCCUUgACCAggcuACcgCa -3'
miRNA:   3'- aCGgGGUG-CUCGAGGAG-UGGU----UGuaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.