miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3978 5' -56.6 NC_001650.1 + 3584 0.67 0.872893
Target:  5'- aGCCCCucugucaugGCG-GCcCCUCAUUAACAUg -3'
miRNA:   3'- aCGGGG---------UGCuCGaGGAGUGGUUGUAg -5'
3978 5' -56.6 NC_001650.1 + 3737 0.68 0.808637
Target:  5'- -cCCCCGCaGGCUCCUCcuGCCAGUAUa -3'
miRNA:   3'- acGGGGUGcUCGAGGAG--UGGUUGUAg -5'
3978 5' -56.6 NC_001650.1 + 8591 0.66 0.906367
Target:  5'- gGCCCCAUGGGaCUCC-C-CCGugGc- -3'
miRNA:   3'- aCGGGGUGCUC-GAGGaGuGGUugUag -5'
3978 5' -56.6 NC_001650.1 + 14290 0.69 0.781729
Target:  5'- aGUCCCACGuGCUCCcuaagaGCCAAUg-- -3'
miRNA:   3'- aCGGGGUGCuCGAGGag----UGGUUGuag -5'
3978 5' -56.6 NC_001650.1 + 24430 0.76 0.37435
Target:  5'- gGCCCUACGAGCgggagagggaggccuUCCUCGCCuACAc- -3'
miRNA:   3'- aCGGGGUGCUCG---------------AGGAGUGGuUGUag -5'
3978 5' -56.6 NC_001650.1 + 27795 0.66 0.900124
Target:  5'- cUGUgCCGCG-GCUCCUgcccgGCCAgcuGCGUCa -3'
miRNA:   3'- -ACGgGGUGCuCGAGGAg----UGGU---UGUAG- -5'
3978 5' -56.6 NC_001650.1 + 28123 0.68 0.790843
Target:  5'- gUGCCCCugG-GCaaCCUgGCCGGgGUCc -3'
miRNA:   3'- -ACGGGGugCuCGa-GGAgUGGUUgUAG- -5'
3978 5' -56.6 NC_001650.1 + 30156 0.67 0.842268
Target:  5'- cUGUCCCuCGAGCUCCagCACCuccuccagAACAc- -3'
miRNA:   3'- -ACGGGGuGCUCGAGGa-GUGG--------UUGUag -5'
3978 5' -56.6 NC_001650.1 + 33613 0.69 0.781729
Target:  5'- gGCCUCgcucaugugguACGAGCUgagcaagaucaaCCcCACCAGCGUCa -3'
miRNA:   3'- aCGGGG-----------UGCUCGA------------GGaGUGGUUGUAG- -5'
3978 5' -56.6 NC_001650.1 + 35516 0.66 0.912379
Target:  5'- gUGCCCgAgGGGCUCaagcuggacuuuCUCAuCCAGCAg- -3'
miRNA:   3'- -ACGGGgUgCUCGAG------------GAGU-GGUUGUag -5'
3978 5' -56.6 NC_001650.1 + 36102 0.68 0.808637
Target:  5'- gUGCCCCuCGGagcuggaccuGCUCUaccucuuuuUCACCAugAUCa -3'
miRNA:   3'- -ACGGGGuGCU----------CGAGG---------AGUGGUugUAG- -5'
3978 5' -56.6 NC_001650.1 + 37645 0.71 0.664603
Target:  5'- gGCCCCccguCGGGUUCCUCAagguggUgGACAUCc -3'
miRNA:   3'- aCGGGGu---GCUCGAGGAGU------GgUUGUAG- -5'
3978 5' -56.6 NC_001650.1 + 37981 0.66 0.906367
Target:  5'- -cCCCCGCGAGCg----GCCAugGUCa -3'
miRNA:   3'- acGGGGUGCUCGaggagUGGUugUAG- -5'
3978 5' -56.6 NC_001650.1 + 40162 0.69 0.753631
Target:  5'- cGUCCUugGAGUUCUggGCCGcCAUCu -3'
miRNA:   3'- aCGGGGugCUCGAGGagUGGUuGUAG- -5'
3978 5' -56.6 NC_001650.1 + 40454 0.66 0.912379
Target:  5'- gGCCUuCuuGAgGCUCCUCACCGAgGa- -3'
miRNA:   3'- aCGGG-GugCU-CGAGGAGUGGUUgUag -5'
3978 5' -56.6 NC_001650.1 + 46047 0.71 0.634147
Target:  5'- aUGCUCCACGAGCUCagggcCGCCuuCAg- -3'
miRNA:   3'- -ACGGGGUGCUCGAGga---GUGGuuGUag -5'
3978 5' -56.6 NC_001650.1 + 47080 0.67 0.857983
Target:  5'- -uCCUCGCGGGCgccCCUCGCCAGa--- -3'
miRNA:   3'- acGGGGUGCUCGa--GGAGUGGUUguag -5'
3978 5' -56.6 NC_001650.1 + 48747 0.66 0.912379
Target:  5'- cGCCuCCACGGGCaggauuuacugcUCCUUuugcgggagcuGCC-GCAUCa -3'
miRNA:   3'- aCGG-GGUGCUCG------------AGGAG-----------UGGuUGUAG- -5'
3978 5' -56.6 NC_001650.1 + 49290 0.67 0.850223
Target:  5'- cUGCCCC-CGGGCcuggagCUgGCCAGCGUg -3'
miRNA:   3'- -ACGGGGuGCUCGag----GAgUGGUUGUAg -5'
3978 5' -56.6 NC_001650.1 + 49785 0.69 0.772484
Target:  5'- aGUUCUcggACGGGCUCCUCGuCCAgggccuccuccACAUCg -3'
miRNA:   3'- aCGGGG---UGCUCGAGGAGU-GGU-----------UGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.