miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3978 5' -56.6 NC_001650.1 + 130606 0.68 0.814719
Target:  5'- cGCgCCCACGAGaCggacgacgugggggUCCUCACCGAgGc- -3'
miRNA:   3'- aCG-GGGUGCUC-G--------------AGGAGUGGUUgUag -5'
3978 5' -56.6 NC_001650.1 + 132115 0.69 0.753631
Target:  5'- -cCCCUACGGGCcgCC-CACCGGCAg- -3'
miRNA:   3'- acGGGGUGCUCGa-GGaGUGGUUGUag -5'
3978 5' -56.6 NC_001650.1 + 109365 0.69 0.763115
Target:  5'- gGCCUCccggacgcggACGGGCcCCUggaCACCGGCAUCu -3'
miRNA:   3'- aCGGGG----------UGCUCGaGGA---GUGGUUGUAG- -5'
3978 5' -56.6 NC_001650.1 + 117612 0.69 0.772484
Target:  5'- aGCCCCugGAcGCcuaugCC-CGCCGACcgCu -3'
miRNA:   3'- aCGGGGugCU-CGa----GGaGUGGUUGuaG- -5'
3978 5' -56.6 NC_001650.1 + 123410 0.69 0.772484
Target:  5'- --aCCCuCGAGggCCUCGCCAGCAa- -3'
miRNA:   3'- acgGGGuGCUCgaGGAGUGGUUGUag -5'
3978 5' -56.6 NC_001650.1 + 33613 0.69 0.781729
Target:  5'- gGCCUCgcucaugugguACGAGCUgagcaagaucaaCCcCACCAGCGUCa -3'
miRNA:   3'- aCGGGG-----------UGCUCGA------------GGaGUGGUUGUAG- -5'
3978 5' -56.6 NC_001650.1 + 80871 0.69 0.781729
Target:  5'- cGCCCCGCGAGgaUCCaggacauuaUCuCUGGCGUCa -3'
miRNA:   3'- aCGGGGUGCUCg-AGG---------AGuGGUUGUAG- -5'
3978 5' -56.6 NC_001650.1 + 101276 0.69 0.781729
Target:  5'- aUGCCCUACGAuCUCU--GCCAGCAc- -3'
miRNA:   3'- -ACGGGGUGCUcGAGGagUGGUUGUag -5'
3978 5' -56.6 NC_001650.1 + 36102 0.68 0.808637
Target:  5'- gUGCCCCuCGGagcuggaccuGCUCUaccucuuuuUCACCAugAUCa -3'
miRNA:   3'- -ACGGGGuGCU----------CGAGG---------AGUGGUugUAG- -5'
3978 5' -56.6 NC_001650.1 + 81540 0.7 0.714729
Target:  5'- aGCCgCGCGAGgUCCUCugCGucuGCAc- -3'
miRNA:   3'- aCGGgGUGCUCgAGGAGugGU---UGUag -5'
3978 5' -56.6 NC_001650.1 + 130996 0.7 0.704808
Target:  5'- cGCCCCugucGCGGGC-CCUCuauugguCCAACAg- -3'
miRNA:   3'- aCGGGG----UGCUCGaGGAGu------GGUUGUag -5'
3978 5' -56.6 NC_001650.1 + 59403 0.7 0.684791
Target:  5'- cGCUgCugGAGggCCUCACCAACu-- -3'
miRNA:   3'- aCGGgGugCUCgaGGAGUGGUUGuag -5'
3978 5' -56.6 NC_001650.1 + 120166 0.8 0.234229
Target:  5'- gGUCCCugGCGAGCUUCUCGCCAGaGUCg -3'
miRNA:   3'- aCGGGG--UGCUCGAGGAGUGGUUgUAG- -5'
3978 5' -56.6 NC_001650.1 + 24430 0.76 0.37435
Target:  5'- gGCCCUACGAGCgggagagggaggccuUCCUCGCCuACAc- -3'
miRNA:   3'- aCGGGGUGCUCG---------------AGGAGUGGuUGUag -5'
3978 5' -56.6 NC_001650.1 + 157148 0.76 0.387475
Target:  5'- aUGUCCCACuccaGGGCccccUCCUgCACCAGCGUCa -3'
miRNA:   3'- -ACGGGGUG----CUCG----AGGA-GUGGUUGUAG- -5'
3978 5' -56.6 NC_001650.1 + 83156 0.72 0.603675
Target:  5'- cGUCCCugGAGCUcgugaaCCUCACCAu---- -3'
miRNA:   3'- aCGGGGugCUCGA------GGAGUGGUuguag -5'
3978 5' -56.6 NC_001650.1 + 121505 0.71 0.634147
Target:  5'- aGCCCCACcAGCaucUCC-CACCGGCugGUCa -3'
miRNA:   3'- aCGGGGUGcUCG---AGGaGUGGUUG--UAG- -5'
3978 5' -56.6 NC_001650.1 + 156131 0.71 0.644311
Target:  5'- cGCCCCGgGGGuCUCUgagaacagCACCAGCAg- -3'
miRNA:   3'- aCGGGGUgCUC-GAGGa-------GUGGUUGUag -5'
3978 5' -56.6 NC_001650.1 + 37645 0.71 0.664603
Target:  5'- gGCCCCccguCGGGUUCCUCAagguggUgGACAUCc -3'
miRNA:   3'- aCGGGGu---GCUCGAGGAGU------GgUUGUAG- -5'
3978 5' -56.6 NC_001650.1 + 157029 0.71 0.664603
Target:  5'- cGCCCUGCu-GCUgCCUCACCAGCc-- -3'
miRNA:   3'- aCGGGGUGcuCGA-GGAGUGGUUGuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.