miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3978 5' -56.6 NC_001650.1 + 122254 1.09 0.002639
Target:  5'- gUGCCCCACGAGCUCCUCACCAACAUCu -3'
miRNA:   3'- -ACGGGGUGCUCGAGGAGUGGUUGUAG- -5'
3978 5' -56.6 NC_001650.1 + 124873 0.83 0.146029
Target:  5'- cGCCCUGCGGcGCUCCUCccCCAGCAUCu -3'
miRNA:   3'- aCGGGGUGCU-CGAGGAGu-GGUUGUAG- -5'
3978 5' -56.6 NC_001650.1 + 120166 0.8 0.234229
Target:  5'- gGUCCCugGCGAGCUUCUCGCCAGaGUCg -3'
miRNA:   3'- aCGGGG--UGCUCGAGGAGUGGUUgUAG- -5'
3978 5' -56.6 NC_001650.1 + 66348 0.79 0.266423
Target:  5'- aGCCCCACGAGUUcaccuccaccugcaaCCUgGCCAACGUg -3'
miRNA:   3'- aCGGGGUGCUCGA---------------GGAgUGGUUGUAg -5'
3978 5' -56.6 NC_001650.1 + 24430 0.76 0.37435
Target:  5'- gGCCCUACGAGCgggagagggaggccuUCCUCGCCuACAc- -3'
miRNA:   3'- aCGGGGUGCUCG---------------AGGAGUGGuUGUag -5'
3978 5' -56.6 NC_001650.1 + 157148 0.76 0.387475
Target:  5'- aUGUCCCACuccaGGGCccccUCCUgCACCAGCGUCa -3'
miRNA:   3'- -ACGGGGUG----CUCG----AGGA-GUGGUUGUAG- -5'
3978 5' -56.6 NC_001650.1 + 162593 0.72 0.59355
Target:  5'- aGCCCCGCGGGCagCUCAgaGACGg- -3'
miRNA:   3'- aCGGGGUGCUCGagGAGUggUUGUag -5'
3978 5' -56.6 NC_001650.1 + 83156 0.72 0.603675
Target:  5'- cGUCCCugGAGCUcgugaaCCUCACCAu---- -3'
miRNA:   3'- aCGGGGugCUCGA------GGAGUGGUuguag -5'
3978 5' -56.6 NC_001650.1 + 123458 0.71 0.628047
Target:  5'- cGCCCCugcccagcaccuacgGgGAGCUCCUgGCCGACc-- -3'
miRNA:   3'- aCGGGG---------------UgCUCGAGGAgUGGUUGuag -5'
3978 5' -56.6 NC_001650.1 + 46047 0.71 0.634147
Target:  5'- aUGCUCCACGAGCUCagggcCGCCuuCAg- -3'
miRNA:   3'- -ACGGGGUGCUCGAGga---GUGGuuGUag -5'
3978 5' -56.6 NC_001650.1 + 121505 0.71 0.634147
Target:  5'- aGCCCCACcAGCaucUCC-CACCGGCugGUCa -3'
miRNA:   3'- aCGGGGUGcUCG---AGGaGUGGUUG--UAG- -5'
3978 5' -56.6 NC_001650.1 + 156131 0.71 0.644311
Target:  5'- cGCCCCGgGGGuCUCUgagaacagCACCAGCAg- -3'
miRNA:   3'- aCGGGGUgCUC-GAGGa-------GUGGUUGUag -5'
3978 5' -56.6 NC_001650.1 + 113359 0.71 0.654466
Target:  5'- gGCCCCACGAuggaguugccGCUCUggcCCAGCAUg -3'
miRNA:   3'- aCGGGGUGCU----------CGAGGaguGGUUGUAg -5'
3978 5' -56.6 NC_001650.1 + 126135 0.71 0.654466
Target:  5'- gGCCCCggcgggcggcuGCGAGgaUCUCAUCAGCGUg -3'
miRNA:   3'- aCGGGG-----------UGCUCgaGGAGUGGUUGUAg -5'
3978 5' -56.6 NC_001650.1 + 157029 0.71 0.664603
Target:  5'- cGCCCUGCu-GCUgCCUCACCAGCc-- -3'
miRNA:   3'- aCGGGGUGcuCGA-GGAGUGGUUGuag -5'
3978 5' -56.6 NC_001650.1 + 37645 0.71 0.664603
Target:  5'- gGCCCCccguCGGGUUCCUCAagguggUgGACAUCc -3'
miRNA:   3'- aCGGGGu---GCUCGAGGAGU------GgUUGUAG- -5'
3978 5' -56.6 NC_001650.1 + 134227 0.71 0.674715
Target:  5'- uUGCUCCACGGGCUCgCaggUGCCggUGUCc -3'
miRNA:   3'- -ACGGGGUGCUCGAG-Ga--GUGGuuGUAG- -5'
3978 5' -56.6 NC_001650.1 + 59403 0.7 0.684791
Target:  5'- cGCUgCugGAGggCCUCACCAACu-- -3'
miRNA:   3'- aCGGgGugCUCgaGGAGUGGUUGuag -5'
3978 5' -56.6 NC_001650.1 + 66931 0.7 0.694826
Target:  5'- aUGCCcaCCGCGGGCaCCUC-CCAGC-UCa -3'
miRNA:   3'- -ACGG--GGUGCUCGaGGAGuGGUUGuAG- -5'
3978 5' -56.6 NC_001650.1 + 130996 0.7 0.704808
Target:  5'- cGCCCCugucGCGGGC-CCUCuauugguCCAACAg- -3'
miRNA:   3'- aCGGGG----UGCUCGaGGAGu------GGUUGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.