Results 1 - 20 of 39 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
402 | 3' | -54.1 | AC_000011.1 | + | 12782 | 0.66 | 0.706504 |
Target: 5'- aCCUgaUUAACCugUACCGCGAgGCc- -3' miRNA: 3'- -GGGgaAGUUGGugGUGGCGUUaCGcc -5' |
|||||||
402 | 3' | -54.1 | AC_000011.1 | + | 26128 | 0.66 | 0.706504 |
Target: 5'- uCCaCCU---GCUGCCGCCGC--UGUGGa -3' miRNA: 3'- -GG-GGAaguUGGUGGUGGCGuuACGCC- -5' |
|||||||
402 | 3' | -54.1 | AC_000011.1 | + | 8535 | 0.66 | 0.706504 |
Target: 5'- gCCCCg--AGCCGCCccuGCCGCccgGCGc -3' miRNA: 3'- -GGGGaagUUGGUGG---UGGCGuuaCGCc -5' |
|||||||
402 | 3' | -54.1 | AC_000011.1 | + | 30915 | 0.66 | 0.695409 |
Target: 5'- aCCCCcaguACCGCgACCaGCGAgggcGCGGc -3' miRNA: 3'- -GGGGaaguUGGUGgUGG-CGUUa---CGCC- -5' |
|||||||
402 | 3' | -54.1 | AC_000011.1 | + | 15997 | 0.66 | 0.695409 |
Target: 5'- gCgCgac-GCCGCCACCGguGUGCGc -3' miRNA: 3'- gGgGaaguUGGUGGUGGCguUACGCc -5' |
|||||||
402 | 3' | -54.1 | AC_000011.1 | + | 8405 | 0.66 | 0.695409 |
Target: 5'- aCCCUgcaagccaUCGACguCGCCACCaaugGCGcgGUGGa -3' miRNA: 3'- gGGGA--------AGUUG--GUGGUGG----CGUuaCGCC- -5' |
|||||||
402 | 3' | -54.1 | AC_000011.1 | + | 11979 | 0.66 | 0.690953 |
Target: 5'- aCCUCUUCuacguaggguccuGCCGCCGCCucCAAggcccgGCGGc -3' miRNA: 3'- -GGGGAAGu------------UGGUGGUGGc-GUUa-----CGCC- -5' |
|||||||
402 | 3' | -54.1 | AC_000011.1 | + | 17406 | 0.66 | 0.67304 |
Target: 5'- -gCCUgc-ACCGCCACggaaGCAAUGcCGGg -3' miRNA: 3'- ggGGAaguUGGUGGUGg---CGUUAC-GCC- -5' |
|||||||
402 | 3' | -54.1 | AC_000011.1 | + | 34740 | 0.66 | 0.661788 |
Target: 5'- gCgCCga-GACCGCCGCCGgCGAU-CGGu -3' miRNA: 3'- -GgGGaagUUGGUGGUGGC-GUUAcGCC- -5' |
|||||||
402 | 3' | -54.1 | AC_000011.1 | + | 10322 | 0.67 | 0.639208 |
Target: 5'- uUCCCgcgcgccUCcACCACCGCCGCcg-GCa- -3' miRNA: 3'- -GGGGa------AGuUGGUGGUGGCGuuaCGcc -5' |
|||||||
402 | 3' | -54.1 | AC_000011.1 | + | 33808 | 0.67 | 0.639208 |
Target: 5'- gCCCCgcagcagUCGcuGCCGCCGCCGCuccgucaagcUGCu- -3' miRNA: 3'- -GGGGa------AGU--UGGUGGUGGCGuu--------ACGcc -5' |
|||||||
402 | 3' | -54.1 | AC_000011.1 | + | 17326 | 0.67 | 0.632424 |
Target: 5'- uCCCCc-CAACCgcuugcugauggcgcGCCGCCGCcg-GUGGu -3' miRNA: 3'- -GGGGaaGUUGG---------------UGGUGGCGuuaCGCC- -5' |
|||||||
402 | 3' | -54.1 | AC_000011.1 | + | 7507 | 0.67 | 0.627902 |
Target: 5'- gCCCCacgUCAAggGCCGuCCGCGAUucGUGGa -3' miRNA: 3'- -GGGGa--AGUUggUGGU-GGCGUUA--CGCC- -5' |
|||||||
402 | 3' | -54.1 | AC_000011.1 | + | 18449 | 0.67 | 0.626771 |
Target: 5'- gCCCacgCAcgaugugACCACCgACCGCAGccaGCGGc -3' miRNA: 3'- gGGGaa-GU-------UGGUGG-UGGCGUUa--CGCC- -5' |
|||||||
402 | 3' | -54.1 | AC_000011.1 | + | 10198 | 0.67 | 0.626771 |
Target: 5'- -aCCgcCAGCCGCCGCCGCAcuuccucAU-CGGc -3' miRNA: 3'- ggGGaaGUUGGUGGUGGCGU-------UAcGCC- -5' |
|||||||
402 | 3' | -54.1 | AC_000011.1 | + | 8325 | 0.67 | 0.6166 |
Target: 5'- aCUCCUgcaagUCAACCGCgCGCCGCcgcUGCc- -3' miRNA: 3'- -GGGGA-----AGUUGGUG-GUGGCGuu-ACGcc -5' |
|||||||
402 | 3' | -54.1 | AC_000011.1 | + | 21064 | 0.67 | 0.614341 |
Target: 5'- cCCCCUUCucggccgguaacGCCACCACCuaaGCucuUGCu- -3' miRNA: 3'- -GGGGAAGu-----------UGGUGGUGG---CGuu-ACGcc -5' |
|||||||
402 | 3' | -54.1 | AC_000011.1 | + | 15882 | 0.68 | 0.59405 |
Target: 5'- gCCCUgcgCAGCaaggcucgCGCCGCgCGCAugGCGGg -3' miRNA: 3'- gGGGAa--GUUG--------GUGGUG-GCGUuaCGCC- -5' |
|||||||
402 | 3' | -54.1 | AC_000011.1 | + | 17840 | 0.68 | 0.571634 |
Target: 5'- uCCCCUggacaagCGgggcgagaagcgACC-CCGCCcCGAUGCGGa -3' miRNA: 3'- -GGGGAa------GU------------UGGuGGUGGcGUUACGCC- -5' |
|||||||
402 | 3' | -54.1 | AC_000011.1 | + | 20160 | 0.68 | 0.560501 |
Target: 5'- gUCCUUCAACgACUACCuCucgGCGGc -3' miRNA: 3'- gGGGAAGUUGgUGGUGGcGuuaCGCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home