miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
405 3' -59.7 AC_000011.1 + 21269 0.66 0.425918
Target:  5'- aCCGGgGGCGAgcaCUGGCUggCCUu-CGCCu -3'
miRNA:   3'- gGGCCgUUGCU---GGCCGA--GGAcuGCGG- -5'
405 3' -59.7 AC_000011.1 + 12170 0.66 0.425918
Target:  5'- aCCGGCucuCGGCCa--UCCUGGagGCCg -3'
miRNA:   3'- gGGCCGuu-GCUGGccgAGGACUg-CGG- -5'
405 3' -59.7 AC_000011.1 + 15689 0.66 0.425918
Target:  5'- cCCCGccGCcGCGcCCGuCUCCaccgugGACGCCg -3'
miRNA:   3'- -GGGC--CGuUGCuGGCcGAGGa-----CUGCGG- -5'
405 3' -59.7 AC_000011.1 + 13647 0.66 0.425918
Target:  5'- gCCCGGgGAuCGuccCUGuGCUCCUG-CGCa -3'
miRNA:   3'- -GGGCCgUU-GCu--GGC-CGAGGACuGCGg -5'
405 3' -59.7 AC_000011.1 + 8570 0.66 0.42498
Target:  5'- aCUGGCGugaGCGACgacgcgaCGGUUgacguccuggaUCUGACGCCu -3'
miRNA:   3'- gGGCCGU---UGCUG-------GCCGA-----------GGACUGCGG- -5'
405 3' -59.7 AC_000011.1 + 13411 0.66 0.416595
Target:  5'- gCCgCGGCAgcacccucGCGGCCGGacagcgCCgaggacgGGCGUCg -3'
miRNA:   3'- -GG-GCCGU--------UGCUGGCCga----GGa------CUGCGG- -5'
405 3' -59.7 AC_000011.1 + 15448 0.66 0.416595
Target:  5'- --gGGCAG-GugCGGCgUCUGGCGUCa -3'
miRNA:   3'- gggCCGUUgCugGCCGaGGACUGCGG- -5'
405 3' -59.7 AC_000011.1 + 20005 0.66 0.407397
Target:  5'- aCCCgGGCAGgaGCaggaGGCUCUUGAUGgCg -3'
miRNA:   3'- -GGG-CCGUUgcUGg---CCGAGGACUGCgG- -5'
405 3' -59.7 AC_000011.1 + 25076 0.66 0.407397
Target:  5'- -gCGGCGAgGGCCuGCUCgaG-UGCCa -3'
miRNA:   3'- ggGCCGUUgCUGGcCGAGgaCuGCGG- -5'
405 3' -59.7 AC_000011.1 + 16347 0.66 0.398327
Target:  5'- gCCCGGCgAGCGcuCCGGCaccgcuUCCaaGCGCUc -3'
miRNA:   3'- -GGGCCG-UUGCu-GGCCG------AGGacUGCGG- -5'
405 3' -59.7 AC_000011.1 + 11057 0.66 0.398327
Target:  5'- cUCCGGCGACGACgcccccaGGCgcgCCaGccccuCGCCc -3'
miRNA:   3'- -GGGCCGUUGCUGg------CCGa--GGaCu----GCGG- -5'
405 3' -59.7 AC_000011.1 + 10217 0.66 0.398327
Target:  5'- aCCGaGCGAUGGCC-GCUCUac-CGCCa -3'
miRNA:   3'- gGGC-CGUUGCUGGcCGAGGacuGCGG- -5'
405 3' -59.7 AC_000011.1 + 21205 0.66 0.397427
Target:  5'- gCCCaGGUcgcggauGAUGGCCcugaGCUCCUGcuCGCCg -3'
miRNA:   3'- -GGG-CCG-------UUGCUGGc---CGAGGACu-GCGG- -5'
405 3' -59.7 AC_000011.1 + 14721 0.66 0.397427
Target:  5'- --gGGCAACauccCCGcGCUCCUggaugucGACGCCu -3'
miRNA:   3'- gggCCGUUGcu--GGC-CGAGGA-------CUGCGG- -5'
405 3' -59.7 AC_000011.1 + 15960 0.67 0.371909
Target:  5'- cUCCGGgucCuGCCGGCg-CUGGCGCCu -3'
miRNA:   3'- -GGGCCguuGcUGGCCGagGACUGCGG- -5'
405 3' -59.7 AC_000011.1 + 14999 0.67 0.371909
Target:  5'- cCCCGaGaagGGCGugC-GCUCCUGgACGCUg -3'
miRNA:   3'- -GGGC-Cg--UUGCugGcCGAGGAC-UGCGG- -5'
405 3' -59.7 AC_000011.1 + 28269 0.67 0.371909
Target:  5'- cCCCGGUGcUGA-CGGCUCCccGCGCa -3'
miRNA:   3'- -GGGCCGUuGCUgGCCGAGGacUGCGg -5'
405 3' -59.7 AC_000011.1 + 12994 0.67 0.354972
Target:  5'- --aGaGCGugGGCCuGUUCCUGAUGCa -3'
miRNA:   3'- gggC-CGUugCUGGcCGAGGACUGCGg -5'
405 3' -59.7 AC_000011.1 + 15569 0.67 0.354972
Target:  5'- cCCCGuGCGcgugcGCGGgcacuuCCGcGCUCCcuggGGCGCCc -3'
miRNA:   3'- -GGGC-CGU-----UGCU------GGC-CGAGGa---CUGCGG- -5'
405 3' -59.7 AC_000011.1 + 9035 0.67 0.354972
Target:  5'- aUCCaGCGGCGGagCGGCaucUCgCUGACGUCg -3'
miRNA:   3'- -GGGcCGUUGCUg-GCCG---AG-GACUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.