miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
409 3' -57.5 AC_000011.1 + 25833 0.66 0.499452
Target:  5'- cUCGUCCCAucuacugugUGGuCGagcGGGACCCCgACCc -3'
miRNA:   3'- uGGCGGGGU---------ACCuGU---UCUUGGGG-UGG- -5'
409 3' -57.5 AC_000011.1 + 26639 0.66 0.499452
Target:  5'- cGCCGCCC--UGGuguacCAGGAAauuCCCCAgCCc -3'
miRNA:   3'- -UGGCGGGguACCu----GUUCUU---GGGGU-GG- -5'
409 3' -57.5 AC_000011.1 + 22958 0.66 0.488997
Target:  5'- gGCUGCUagcgcuaagaUgAUGGugAAGAACCCUAUg -3'
miRNA:   3'- -UGGCGG----------GgUACCugUUCUUGGGGUGg -5'
409 3' -57.5 AC_000011.1 + 7748 0.66 0.488997
Target:  5'- cUCGCCCUccagcucaaAUGGgaucgcuggcACGGGGACCCCcgcACCu -3'
miRNA:   3'- uGGCGGGG---------UACC----------UGUUCUUGGGG---UGG- -5'
409 3' -57.5 AC_000011.1 + 7511 0.66 0.488997
Target:  5'- aACUGCCCCAcGu-CAAGGGCCguCCGCg -3'
miRNA:   3'- -UGGCGGGGUaCcuGUUCUUGG--GGUGg -5'
409 3' -57.5 AC_000011.1 + 12475 0.66 0.478646
Target:  5'- -gUGCCCCG-GGGCcagGAGGACUaCACCa -3'
miRNA:   3'- ugGCGGGGUaCCUG---UUCUUGGgGUGG- -5'
409 3' -57.5 AC_000011.1 + 11358 0.66 0.477617
Target:  5'- gGCCugauGCaCCUGUGGGaccugcuggaggcCAucgugcAGAACCCCACCa -3'
miRNA:   3'- -UGG----CG-GGGUACCU-------------GU------UCUUGGGGUGG- -5'
409 3' -57.5 AC_000011.1 + 22311 0.66 0.468404
Target:  5'- gGCCuugGCUCCcucGGugAAGAagACCCCGCa -3'
miRNA:   3'- -UGG---CGGGGua-CCugUUCU--UGGGGUGg -5'
409 3' -57.5 AC_000011.1 + 35082 0.66 0.468404
Target:  5'- --aGCCaCCGUGGAacaucuCGAGAACCguaUCACCu -3'
miRNA:   3'- uggCGG-GGUACCU------GUUCUUGG---GGUGG- -5'
409 3' -57.5 AC_000011.1 + 25270 0.66 0.468404
Target:  5'- gACC-CCCCuUGG-CGgcuGAACCCuCGCCu -3'
miRNA:   3'- -UGGcGGGGuACCuGUu--CUUGGG-GUGG- -5'
409 3' -57.5 AC_000011.1 + 4143 0.66 0.458275
Target:  5'- uCCaCCCCcgGGACGGGcucAugCCCAUg -3'
miRNA:   3'- uGGcGGGGuaCCUGUUC---UugGGGUGg -5'
409 3' -57.5 AC_000011.1 + 20734 0.66 0.448265
Target:  5'- -gCGCCcaCCAUGcGcCAGGGccagcccuACCCCGCCa -3'
miRNA:   3'- ugGCGG--GGUAC-CuGUUCU--------UGGGGUGG- -5'
409 3' -57.5 AC_000011.1 + 4637 0.66 0.448265
Target:  5'- uCCGCCCCAaauucauuaaaaUGGcCuauGAugACCUCACCc -3'
miRNA:   3'- uGGCGGGGU------------ACCuGuu-CU--UGGGGUGG- -5'
409 3' -57.5 AC_000011.1 + 11898 0.66 0.447271
Target:  5'- aGCCGCCgggCCuUGGAgGcggcggcAGGACCCUACg -3'
miRNA:   3'- -UGGCGG---GGuACCUgU-------UCUUGGGGUGg -5'
409 3' -57.5 AC_000011.1 + 27201 0.67 0.438377
Target:  5'- aGCUGCCCgA-GGAgCAcccucAGGGCCCgGCCc -3'
miRNA:   3'- -UGGCGGGgUaCCU-GU-----UCUUGGGgUGG- -5'
409 3' -57.5 AC_000011.1 + 8424 0.67 0.428615
Target:  5'- cACa-CCCCAgGGGCAcGGGACCCUGCa -3'
miRNA:   3'- -UGgcGGGGUaCCUGU-UCUUGGGGUGg -5'
409 3' -57.5 AC_000011.1 + 4946 0.67 0.418982
Target:  5'- uCC-CCCCAgGGAUAGGAGCUCCu-- -3'
miRNA:   3'- uGGcGGGGUaCCUGUUCUUGGGGugg -5'
409 3' -57.5 AC_000011.1 + 17997 0.67 0.409482
Target:  5'- gGCCGCgUgGUGGGCA--GACCCaguuuCACCg -3'
miRNA:   3'- -UGGCGgGgUACCUGUucUUGGG-----GUGG- -5'
409 3' -57.5 AC_000011.1 + 18313 0.67 0.409482
Target:  5'- uGCUGCCCCAgUGGGCGuacauGCacaUCGCCg -3'
miRNA:   3'- -UGGCGGGGU-ACCUGUucu--UGg--GGUGG- -5'
409 3' -57.5 AC_000011.1 + 18036 0.67 0.409482
Target:  5'- cCCGCCCCucuacaGUGGcUAAGc-CCCUGCCg -3'
miRNA:   3'- uGGCGGGG------UACCuGUUCuuGGGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.