miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
414 5' -57.1 AC_000011.1 + 23252 0.66 0.489271
Target:  5'- gCCGCCG-CGAcuuGGCGGaUGGCuGGCAGa -3'
miRNA:   3'- -GGCGGCuGCUcu-UCGUC-GUCG-UCGUC- -5'
414 5' -57.1 AC_000011.1 + 26053 0.66 0.478837
Target:  5'- aCCaGCa-GCuAGAaaauccacAGCGGCGGCAGCAGg -3'
miRNA:   3'- -GG-CGgcUGcUCU--------UCGUCGUCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 25989 0.66 0.478837
Target:  5'- cCCGCgGugGAaGAGCAGgUAGCGcCGGg -3'
miRNA:   3'- -GGCGgCugCUcUUCGUC-GUCGUcGUC- -5'
414 5' -57.1 AC_000011.1 + 23530 0.66 0.477799
Target:  5'- aCgGCCG-CGucGGAGGUGGCggggcugGGCGGCGGg -3'
miRNA:   3'- -GgCGGCuGC--UCUUCGUCG-------UCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 31062 0.66 0.468513
Target:  5'- -gGUCGACGGGAcggGGgAGCAcuaaCAGCAGa -3'
miRNA:   3'- ggCGGCUGCUCU---UCgUCGUc---GUCGUC- -5'
414 5' -57.1 AC_000011.1 + 10189 0.66 0.468513
Target:  5'- gCGCCGggcGCGAGGuccucgAGCAuGguGCGGUGGu -3'
miRNA:   3'- gGCGGC---UGCUCU------UCGU-CguCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 12121 0.66 0.468513
Target:  5'- gCGCUGACGAcccgcaaccccGAAGCcuuuAGaCAGCAGCc- -3'
miRNA:   3'- gGCGGCUGCU-----------CUUCG----UC-GUCGUCGuc -5'
414 5' -57.1 AC_000011.1 + 25075 0.66 0.468513
Target:  5'- -aGuuGGCcAGgcGCAGCAgGUAGCAGu -3'
miRNA:   3'- ggCggCUGcUCuuCGUCGU-CGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 11567 0.66 0.458306
Target:  5'- gCCGCUGucCGAGAAGCuGGCGGCcauCAa -3'
miRNA:   3'- -GGCGGCu-GCUCUUCG-UCGUCGuc-GUc -5'
414 5' -57.1 AC_000011.1 + 15757 0.66 0.458306
Target:  5'- aCGCCcGCGccaAGAGcCGGCGGCGGCGc -3'
miRNA:   3'- gGCGGcUGC---UCUUcGUCGUCGUCGUc -5'
414 5' -57.1 AC_000011.1 + 22477 0.66 0.458306
Target:  5'- aCCGCUG--GGGgcGCAGCGuGguGCAGc -3'
miRNA:   3'- -GGCGGCugCUCuuCGUCGU-CguCGUC- -5'
414 5' -57.1 AC_000011.1 + 24675 0.67 0.418714
Target:  5'- uCUGCCacaccuggcaGACGGGcauGGGCGuGUGGCAGCAGu -3'
miRNA:   3'- -GGCGG----------CUGCUC---UUCGU-CGUCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 11414 0.67 0.41487
Target:  5'- gCCGCUGACGGc--GCAGCuguuccuggugguGCAGCAu -3'
miRNA:   3'- -GGCGGCUGCUcuuCGUCGu------------CGUCGUc -5'
414 5' -57.1 AC_000011.1 + 14806 0.67 0.412001
Target:  5'- aCCGCCucuaccgaggucaggGGCGAuaauuuugcaagcGccGCAGCAGUGGCAGc -3'
miRNA:   3'- -GGCGG---------------CUGCU-------------CuuCGUCGUCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 3037 0.67 0.399713
Target:  5'- cCCGCCGGCGcAGGucAGCaucuGGUAGCcGCGc -3'
miRNA:   3'- -GGCGGCUGC-UCU--UCG----UCGUCGuCGUc -5'
414 5' -57.1 AC_000011.1 + 8235 0.67 0.399713
Target:  5'- aCGCUG-CG-GAgucaggucagugGGCAGCGGCGGCGc -3'
miRNA:   3'- gGCGGCuGCuCU------------UCGUCGUCGUCGUc -5'
414 5' -57.1 AC_000011.1 + 34729 0.67 0.399713
Target:  5'- gCCGCCGGCGAucGGUGuGCAGC-GCc- -3'
miRNA:   3'- -GGCGGCUGCUcuUCGU-CGUCGuCGuc -5'
414 5' -57.1 AC_000011.1 + 13350 0.68 0.390421
Target:  5'- uCCgGCCG-CGAGGGuGCuGCcGCGGCGGu -3'
miRNA:   3'- -GG-CGGCuGCUCUU-CGuCGuCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 13701 0.68 0.390421
Target:  5'- uCCGCCGACGAc-AGCAGCGuGUuggacuugGGUGGg -3'
miRNA:   3'- -GGCGGCUGCUcuUCGUCGU-CG--------UCGUC- -5'
414 5' -57.1 AC_000011.1 + 25167 0.68 0.381271
Target:  5'- gCgGUgCGGCGugcAGAGGUuGCAGCGGCAGu -3'
miRNA:   3'- -GgCG-GCUGC---UCUUCGuCGUCGUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.