Results 1 - 20 of 270 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4291 | 3' | -58.5 | NC_001716.2 | + | 143783 | 0.66 | 0.773414 |
Target: 5'- aGGGUUAGGGUUAGGGUUaaacuuagAGCUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGcg------UCGGgau -5' |
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4291 | 3' | -58.5 | NC_001716.2 | + | 881 | 0.66 | 0.773414 |
Target: 5'- aGGGUUAGGGUUAGGGUUaaacuuagAGCUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGcg------UCGGgau -5' |
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4291 | 3' | -58.5 | NC_001716.2 | + | 143290 | 0.67 | 0.74498 |
Target: 5'- uGGGUUAGGGUUAGGGUUagGGUUn-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5' |
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4291 | 3' | -58.5 | NC_001716.2 | + | 387 | 0.67 | 0.74498 |
Target: 5'- uGGGUUAGGGUUAGGGUUagGGUUn-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5' |
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4291 | 3' | -58.5 | NC_001716.2 | + | 6975 | 0.67 | 0.715668 |
Target: 5'- aGGGUUAGGGUU-GGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAuCCCggCgUCGGgau -5' |
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4291 | 3' | -58.5 | NC_001716.2 | + | 143879 | 0.67 | 0.705744 |
Target: 5'- aGGGcUAGGGUUAGGGCUaaGGgCUa- -3' miRNA: 3'- -CCCaAUCCCAAUCCCGGcgUCgGGau -5' |
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4291 | 3' | -58.5 | NC_001716.2 | + | 151878 | 0.68 | 0.655378 |
Target: 5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5' |
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4291 | 3' | -58.5 | NC_001716.2 | + | 148972 | 0.68 | 0.655378 |
Target: 5'- aGGGUUAGGGUUAGGGUUugGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5' |
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4291 | 3' | -58.5 | NC_001716.2 | + | 148900 | 0.68 | 0.655378 |
Target: 5'- aGGGUUAGGGUUAGGGUUugGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5' |
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4291 | 3' | -58.5 | NC_001716.2 | + | 143014 | 0.68 | 0.655378 |
Target: 5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5' |
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4291 | 3' | -58.5 | NC_001716.2 | + | 142990 | 0.68 | 0.655378 |
Target: 5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5' |
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4291 | 3' | -58.5 | NC_001716.2 | + | 9731 | 0.68 | 0.655378 |
Target: 5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5' |
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4291 | 3' | -58.5 | NC_001716.2 | + | 151932 | 0.68 | 0.655378 |
Target: 5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5' |
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4291 | 3' | -58.5 | NC_001716.2 | + | 152082 | 0.68 | 0.655378 |
Target: 5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5' |
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4291 | 3' | -58.5 | NC_001716.2 | + | 152106 | 0.68 | 0.655378 |
Target: 5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5' |
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4291 | 3' | -58.5 | NC_001716.2 | + | 152130 | 0.68 | 0.655378 |
Target: 5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5' |
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4291 | 3' | -58.5 | NC_001716.2 | + | 152280 | 0.68 | 0.655378 |
Target: 5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5' |
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4291 | 3' | -58.5 | NC_001716.2 | + | 152376 | 0.68 | 0.655378 |
Target: 5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5' |
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4291 | 3' | -58.5 | NC_001716.2 | + | 152478 | 0.68 | 0.655378 |
Target: 5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5' |
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4291 | 3' | -58.5 | NC_001716.2 | + | 9575 | 0.68 | 0.655378 |
Target: 5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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