miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4291 5' -56.7 NC_001716.2 + 149777 0.66 0.869841
Target:  5'- gGUUAGGGuuGgGGUUagacuuagagCUAGGGUUAGn -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCc -5'
4291 5' -56.7 NC_001716.2 + 149052 0.66 0.869841
Target:  5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGn -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCc -5'
4291 5' -56.7 NC_001716.2 + 6875 0.66 0.869841
Target:  5'- gGUUAGGGuuGgGGUUagacuuagagCUAGGGUUAGn -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCc -5'
4291 5' -56.7 NC_001716.2 + 6149 0.66 0.869841
Target:  5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGn -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCc -5'
4291 5' -56.7 NC_001716.2 + 148878 0.66 0.869841
Target:  5'- gGUUGGGGUUagacuUAGagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGc----GUCggGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 150641 0.66 0.869841
Target:  5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGn -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCc -5'
4291 5' -56.7 NC_001716.2 + 985 0.67 0.846743
Target:  5'- gGUUAGGGCUaaGGCUaggaUUGGGGUUAcGGu -3'
miRNA:   3'- -CAAUCCCGGcgUCGG----GAUCCCAAU-CC- -5'
4291 5' -56.7 NC_001716.2 + 5976 0.67 0.83036
Target:  5'- gGUUGGGGUUagauUAGagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGc---GUCggGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 142976 0.68 0.758266
Target:  5'- -gUGGGGgCGgGGUUagggUUAGGGUUAGGg -3'
miRNA:   3'- caAUCCCgGCgUCGG----GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 73 0.68 0.758266
Target:  5'- -gUGGGGgCGgGGUUagggUUAGGGUUAGGg -3'
miRNA:   3'- caAUCCCgGCgUCGG----GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 8960 0.68 0.748658
Target:  5'- gGUUAGGGU--UAGaCUUAGGGUUAGGu -3'
miRNA:   3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 152678 0.69 0.738947
Target:  5'- gGUUAGGGUUagGGUUaggCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGcgUCGG---GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 152713 0.69 0.729143
Target:  5'- gGUUAGGGU--UAGagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCggGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 152522 0.69 0.729143
Target:  5'- gGUUAGGGU--UAGagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCggGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 152168 0.69 0.729143
Target:  5'- gGUUAGGGU--UAGagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCggGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 9811 0.69 0.729143
Target:  5'- gGUUAGGGU--UAGagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCggGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 9619 0.69 0.729143
Target:  5'- gGUUAGGGU--UAGagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCggGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 9265 0.69 0.729143
Target:  5'- gGUUAGGGU--UAGagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCggGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 143064 0.69 0.709292
Target:  5'- gGUUAGGGUCagGGUCaggguUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGcgUCGGg----AUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 161 0.69 0.709292
Target:  5'- gGUUAGGGUCagGGUCaggguUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGcgUCGGg----AUCCCAAUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.