Results 1 - 20 of 474 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5104 | 5' | -68.6 | NC_001798.1 | + | 145106 | 0.66 | 0.418558 |
Target: 5'- uUGCCUGugacccACCCCaCGCCCcccaGGCUCCCauaacgacaaGCCc -3' miRNA: 3'- -ACGGGC------UGGGG-GCGGG----CUGGGGG----------CGG- -5' |
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5104 | 5' | -68.6 | NC_001798.1 | + | 135353 | 0.66 | 0.418558 |
Target: 5'- cGCCUG-CCCCgCGCuCCGGCagCUGCUc -3' miRNA: 3'- aCGGGCuGGGG-GCG-GGCUGggGGCGG- -5' |
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5104 | 5' | -68.6 | NC_001798.1 | + | 104656 | 0.66 | 0.418558 |
Target: 5'- gGCCagGGCCCCgUGCUcguagCGGCCgCCgGCCg -3' miRNA: 3'- aCGGg-CUGGGG-GCGG-----GCUGG-GGgCGG- -5' |
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5104 | 5' | -68.6 | NC_001798.1 | + | 37290 | 0.66 | 0.418558 |
Target: 5'- gGCCC-ACCCUgGCgugggaggCGACCuCCCGUCg -3' miRNA: 3'- aCGGGcUGGGGgCGg-------GCUGG-GGGCGG- -5' |
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5104 | 5' | -68.6 | NC_001798.1 | + | 25825 | 0.66 | 0.418558 |
Target: 5'- cUGgCCGGCgCCUGC--GACCgCCGCCu -3' miRNA: 3'- -ACgGGCUGgGGGCGggCUGGgGGCGG- -5' |
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5104 | 5' | -68.6 | NC_001798.1 | + | 143304 | 0.66 | 0.418558 |
Target: 5'- cGUCCG-CCCCCGgCgGGuCgCCgGCCa -3' miRNA: 3'- aCGGGCuGGGGGCgGgCU-GgGGgCGG- -5' |
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5104 | 5' | -68.6 | NC_001798.1 | + | 79451 | 0.66 | 0.416962 |
Target: 5'- cGCCCGGgccucuucuuCCCCCGagggccacgaggUCGACCCgcagcugcugcgCCGCCg -3' miRNA: 3'- aCGGGCU----------GGGGGCg-----------GGCUGGG------------GGCGG- -5' |
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5104 | 5' | -68.6 | NC_001798.1 | + | 116140 | 0.66 | 0.412989 |
Target: 5'- gGCCCacgucgaGGCCCUgGCCCaGCugguggacgacuuuaCCCUGCCg -3' miRNA: 3'- aCGGG-------CUGGGGgCGGGcUG---------------GGGGCGG- -5' |
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5104 | 5' | -68.6 | NC_001798.1 | + | 138978 | 0.66 | 0.410617 |
Target: 5'- cGCCaCGugUcgaacaCCCGCUCGGCcaCCCCGgCg -3' miRNA: 3'- aCGG-GCugG------GGGCGGGCUG--GGGGCgG- -5' |
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5104 | 5' | -68.6 | NC_001798.1 | + | 52781 | 0.66 | 0.410617 |
Target: 5'- cGCCCcgGGCgCCCGUgagcgggaCGGCagaCCCCGCCu -3' miRNA: 3'- aCGGG--CUGgGGGCGg-------GCUG---GGGGCGG- -5' |
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5104 | 5' | -68.6 | NC_001798.1 | + | 131071 | 0.66 | 0.410617 |
Target: 5'- cGCCC-ACCgCgGCguacaCGGCCgCCGCCa -3' miRNA: 3'- aCGGGcUGGgGgCGg----GCUGGgGGCGG- -5' |
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5104 | 5' | -68.6 | NC_001798.1 | + | 145749 | 0.66 | 0.410617 |
Target: 5'- cGCCacACCCaCgGCaCCccCCCCCGCCg -3' miRNA: 3'- aCGGgcUGGG-GgCG-GGcuGGGGGCGG- -5' |
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5104 | 5' | -68.6 | NC_001798.1 | + | 139 | 0.66 | 0.410617 |
Target: 5'- cGgCCGcuCCCCCGCgggcgCCGccccucCCCCCGCg -3' miRNA: 3'- aCgGGCu-GGGGGCG-----GGCu-----GGGGGCGg -5' |
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5104 | 5' | -68.6 | NC_001798.1 | + | 7759 | 0.66 | 0.410617 |
Target: 5'- cGCCUGugugcucucaacACCCaCGaCCCaccGCCCCCGCUg -3' miRNA: 3'- aCGGGC------------UGGGgGC-GGGc--UGGGGGCGG- -5' |
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5104 | 5' | -68.6 | NC_001798.1 | + | 154477 | 0.66 | 0.410617 |
Target: 5'- cGgCCGcuCCCCCGCgggcgCCGccccucCCCCCGCg -3' miRNA: 3'- aCgGGCu-GGGGGCG-----GGCu-----GGGGGCGg -5' |
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5104 | 5' | -68.6 | NC_001798.1 | + | 59747 | 0.66 | 0.410617 |
Target: 5'- gGCCCcgggguGCCUCCGCuuGGuuCCCGgCg -3' miRNA: 3'- aCGGGc-----UGGGGGCGggCUggGGGCgG- -5' |
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5104 | 5' | -68.6 | NC_001798.1 | + | 42440 | 0.66 | 0.409828 |
Target: 5'- cGCCUGcuggaucACCCUCGCC--ACCCCaCGCa -3' miRNA: 3'- aCGGGC-------UGGGGGCGGgcUGGGG-GCGg -5' |
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5104 | 5' | -68.6 | NC_001798.1 | + | 31883 | 0.66 | 0.409828 |
Target: 5'- gGCCCG-CCCCCggaagaggcgcggGUCgGACucgggCCCCGCg -3' miRNA: 3'- aCGGGCuGGGGG-------------CGGgCUG-----GGGGCGg -5' |
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5104 | 5' | -68.6 | NC_001798.1 | + | 151649 | 0.66 | 0.40277 |
Target: 5'- gGCCCGccucgaacAUCUCCGUguCCGugCugCCCGCCu -3' miRNA: 3'- aCGGGC--------UGGGGGCG--GGCugG--GGGCGG- -5' |
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5104 | 5' | -68.6 | NC_001798.1 | + | 151555 | 0.66 | 0.40277 |
Target: 5'- gGCCC-ACCCCCaCagGAUCCCUGCg -3' miRNA: 3'- aCGGGcUGGGGGcGggCUGGGGGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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