miRNA display CGI


Results 1 - 20 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5104 5' -68.6 NC_001798.1 + 143304 0.66 0.418558
Target:  5'- cGUCCG-CCCCCGgCgGGuCgCCgGCCa -3'
miRNA:   3'- aCGGGCuGGGGGCgGgCU-GgGGgCGG- -5'
5104 5' -68.6 NC_001798.1 + 145106 0.66 0.418558
Target:  5'- uUGCCUGugacccACCCCaCGCCCcccaGGCUCCCauaacgacaaGCCc -3'
miRNA:   3'- -ACGGGC------UGGGG-GCGGG----CUGGGGG----------CGG- -5'
5104 5' -68.6 NC_001798.1 + 135353 0.66 0.418558
Target:  5'- cGCCUG-CCCCgCGCuCCGGCagCUGCUc -3'
miRNA:   3'- aCGGGCuGGGG-GCG-GGCUGggGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 104656 0.66 0.418558
Target:  5'- gGCCagGGCCCCgUGCUcguagCGGCCgCCgGCCg -3'
miRNA:   3'- aCGGg-CUGGGG-GCGG-----GCUGG-GGgCGG- -5'
5104 5' -68.6 NC_001798.1 + 37290 0.66 0.418558
Target:  5'- gGCCC-ACCCUgGCgugggaggCGACCuCCCGUCg -3'
miRNA:   3'- aCGGGcUGGGGgCGg-------GCUGG-GGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 25825 0.66 0.418558
Target:  5'- cUGgCCGGCgCCUGC--GACCgCCGCCu -3'
miRNA:   3'- -ACgGGCUGgGGGCGggCUGGgGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 79451 0.66 0.416962
Target:  5'- cGCCCGGgccucuucuuCCCCCGagggccacgaggUCGACCCgcagcugcugcgCCGCCg -3'
miRNA:   3'- aCGGGCU----------GGGGGCg-----------GGCUGGG------------GGCGG- -5'
5104 5' -68.6 NC_001798.1 + 116140 0.66 0.412989
Target:  5'- gGCCCacgucgaGGCCCUgGCCCaGCugguggacgacuuuaCCCUGCCg -3'
miRNA:   3'- aCGGG-------CUGGGGgCGGGcUG---------------GGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 52781 0.66 0.410617
Target:  5'- cGCCCcgGGCgCCCGUgagcgggaCGGCagaCCCCGCCu -3'
miRNA:   3'- aCGGG--CUGgGGGCGg-------GCUG---GGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 131071 0.66 0.410617
Target:  5'- cGCCC-ACCgCgGCguacaCGGCCgCCGCCa -3'
miRNA:   3'- aCGGGcUGGgGgCGg----GCUGGgGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 145749 0.66 0.410617
Target:  5'- cGCCacACCCaCgGCaCCccCCCCCGCCg -3'
miRNA:   3'- aCGGgcUGGG-GgCG-GGcuGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 139 0.66 0.410617
Target:  5'- cGgCCGcuCCCCCGCgggcgCCGccccucCCCCCGCg -3'
miRNA:   3'- aCgGGCu-GGGGGCG-----GGCu-----GGGGGCGg -5'
5104 5' -68.6 NC_001798.1 + 7759 0.66 0.410617
Target:  5'- cGCCUGugugcucucaacACCCaCGaCCCaccGCCCCCGCUg -3'
miRNA:   3'- aCGGGC------------UGGGgGC-GGGc--UGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 138978 0.66 0.410617
Target:  5'- cGCCaCGugUcgaacaCCCGCUCGGCcaCCCCGgCg -3'
miRNA:   3'- aCGG-GCugG------GGGCGGGCUG--GGGGCgG- -5'
5104 5' -68.6 NC_001798.1 + 154477 0.66 0.410617
Target:  5'- cGgCCGcuCCCCCGCgggcgCCGccccucCCCCCGCg -3'
miRNA:   3'- aCgGGCu-GGGGGCG-----GGCu-----GGGGGCGg -5'
5104 5' -68.6 NC_001798.1 + 59747 0.66 0.410617
Target:  5'- gGCCCcgggguGCCUCCGCuuGGuuCCCGgCg -3'
miRNA:   3'- aCGGGc-----UGGGGGCGggCUggGGGCgG- -5'
5104 5' -68.6 NC_001798.1 + 42440 0.66 0.409828
Target:  5'- cGCCUGcuggaucACCCUCGCC--ACCCCaCGCa -3'
miRNA:   3'- aCGGGC-------UGGGGGCGGgcUGGGG-GCGg -5'
5104 5' -68.6 NC_001798.1 + 31883 0.66 0.409828
Target:  5'- gGCCCG-CCCCCggaagaggcgcggGUCgGACucgggCCCCGCg -3'
miRNA:   3'- aCGGGCuGGGGG-------------CGGgCUG-----GGGGCGg -5'
5104 5' -68.6 NC_001798.1 + 151555 0.66 0.40277
Target:  5'- gGCCC-ACCCCCaCagGAUCCCUGCg -3'
miRNA:   3'- aCGGGcUGGGGGcGggCUGGGGGCGg -5'
5104 5' -68.6 NC_001798.1 + 151269 0.66 0.40277
Target:  5'- cGUgCCGGCCCgcacggCCGCCuCGGCCuCCaCGCg -3'
miRNA:   3'- aCG-GGCUGGG------GGCGG-GCUGG-GG-GCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.