miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5106 3' -62.7 NC_001798.1 + 859 0.66 0.633778
Target:  5'- -gCCCGC-CCgacccccGCCCGCCcgACCCCCn- -3'
miRNA:   3'- gaGGGUGaGGa------CGGGUGG--UGGGGGuc -5'
5106 3' -62.7 NC_001798.1 + 96999 0.66 0.633778
Target:  5'- --gCCAgggCCgGCCCGCCGCCCgCCGa -3'
miRNA:   3'- gagGGUga-GGaCGGGUGGUGGG-GGUc -5'
5106 3' -62.7 NC_001798.1 + 93752 0.66 0.633778
Target:  5'- aUgCgGCUgCggGCCCGCCACCCCa-- -3'
miRNA:   3'- gAgGgUGAgGa-CGGGUGGUGGGGguc -5'
5106 3' -62.7 NC_001798.1 + 92139 0.66 0.633778
Target:  5'- cCUCCCcCgUCUGCCCccggucgucuuGCCggGCCCCCGu -3'
miRNA:   3'- -GAGGGuGaGGACGGG-----------UGG--UGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 34129 0.66 0.633778
Target:  5'- -gCCCgAC-CCgcGCCUGCC-CCCCCGGg -3'
miRNA:   3'- gaGGG-UGaGGa-CGGGUGGuGGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 1334 0.66 0.626907
Target:  5'- aCUCCCgccgcggcccgcgcaGCUCCgccgGgCCGCCGCgcacggcgucgcgCCCCAGc -3'
miRNA:   3'- -GAGGG---------------UGAGGa---CgGGUGGUG-------------GGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 126320 0.66 0.623964
Target:  5'- -gCCCGCcCCggGuCCCGCCGCCgaUCCAGc -3'
miRNA:   3'- gaGGGUGaGGa-C-GGGUGGUGG--GGGUC- -5'
5106 3' -62.7 NC_001798.1 + 31173 0.66 0.62102
Target:  5'- -aCCCGCggaaCCUcccaGCCCGCCgcgacccgaccggcGCCCCCuGg -3'
miRNA:   3'- gaGGGUGa---GGA----CGGGUGG--------------UGGGGGuC- -5'
5106 3' -62.7 NC_001798.1 + 25682 0.66 0.614155
Target:  5'- -aCCgGCUCUgcggGCCCGCCacgGCCgCCUGGg -3'
miRNA:   3'- gaGGgUGAGGa---CGGGUGG---UGG-GGGUC- -5'
5106 3' -62.7 NC_001798.1 + 71999 0.66 0.614155
Target:  5'- --gCCACgugcaaCgCUGCCUACCugCCCCGc -3'
miRNA:   3'- gagGGUGa-----G-GACGGGUGGugGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 91888 0.66 0.614155
Target:  5'- -aCCCAgCUCUgGgCCGCCAUCCgCAGg -3'
miRNA:   3'- gaGGGU-GAGGaCgGGUGGUGGGgGUC- -5'
5106 3' -62.7 NC_001798.1 + 147334 0.66 0.614155
Target:  5'- uUCCCuuCUCCUcgucuucccccGuCCCGCCGCgCCCCu- -3'
miRNA:   3'- gAGGGu-GAGGA-----------C-GGGUGGUG-GGGGuc -5'
5106 3' -62.7 NC_001798.1 + 150996 0.66 0.614155
Target:  5'- -cCCCGC-CCgaccCCCGCCcgACCCCCGc -3'
miRNA:   3'- gaGGGUGaGGac--GGGUGG--UGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 151029 0.66 0.614155
Target:  5'- -cCCCGC-CCgaccCCCGCCcgACCCCCGc -3'
miRNA:   3'- gaGGGUGaGGac--GGGUGG--UGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 151095 0.66 0.614155
Target:  5'- -cCCCGC-CCgcccCCCGCCcgACCCCCGc -3'
miRNA:   3'- gaGGGUGaGGac--GGGUGG--UGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 151062 0.66 0.614155
Target:  5'- -cCCCGC-CCgaccCCCGCCcgACCCCCGc -3'
miRNA:   3'- gaGGGUGaGGac--GGGUGG--UGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 57834 0.66 0.604359
Target:  5'- cCUCCCAaccuaacacCCUaacagugauggGCCCGCCugCCCCc- -3'
miRNA:   3'- -GAGGGUga-------GGA-----------CGGGUGGugGGGGuc -5'
5106 3' -62.7 NC_001798.1 + 31953 0.66 0.604359
Target:  5'- -cCCCGCgCUcGCCCcUCGcCCCCCAGg -3'
miRNA:   3'- gaGGGUGaGGaCGGGuGGU-GGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 134380 0.66 0.604359
Target:  5'- --gCCGCUCCUcGCgCCGCC-CUCCUGGa -3'
miRNA:   3'- gagGGUGAGGA-CG-GGUGGuGGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 63051 0.66 0.604359
Target:  5'- uUCCCuuUCCccagCCGCCACCCCCc- -3'
miRNA:   3'- gAGGGugAGGacg-GGUGGUGGGGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.