Results 1 - 20 of 168 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5106 | 3' | -62.7 | NC_001798.1 | + | 96999 | 0.66 | 0.633778 |
Target: 5'- --gCCAgggCCgGCCCGCCGCCCgCCGa -3' miRNA: 3'- gagGGUga-GGaCGGGUGGUGGG-GGUc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 93752 | 0.66 | 0.633778 |
Target: 5'- aUgCgGCUgCggGCCCGCCACCCCa-- -3' miRNA: 3'- gAgGgUGAgGa-CGGGUGGUGGGGguc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 92139 | 0.66 | 0.633778 |
Target: 5'- cCUCCCcCgUCUGCCCccggucgucuuGCCggGCCCCCGu -3' miRNA: 3'- -GAGGGuGaGGACGGG-----------UGG--UGGGGGUc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 34129 | 0.66 | 0.633778 |
Target: 5'- -gCCCgAC-CCgcGCCUGCC-CCCCCGGg -3' miRNA: 3'- gaGGG-UGaGGa-CGGGUGGuGGGGGUC- -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 859 | 0.66 | 0.633778 |
Target: 5'- -gCCCGC-CCgacccccGCCCGCCcgACCCCCn- -3' miRNA: 3'- gaGGGUGaGGa------CGGGUGG--UGGGGGuc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 1334 | 0.66 | 0.626907 |
Target: 5'- aCUCCCgccgcggcccgcgcaGCUCCgccgGgCCGCCGCgcacggcgucgcgCCCCAGc -3' miRNA: 3'- -GAGGG---------------UGAGGa---CgGGUGGUG-------------GGGGUC- -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 126320 | 0.66 | 0.623964 |
Target: 5'- -gCCCGCcCCggGuCCCGCCGCCgaUCCAGc -3' miRNA: 3'- gaGGGUGaGGa-C-GGGUGGUGG--GGGUC- -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 31173 | 0.66 | 0.62102 |
Target: 5'- -aCCCGCggaaCCUcccaGCCCGCCgcgacccgaccggcGCCCCCuGg -3' miRNA: 3'- gaGGGUGa---GGA----CGGGUGG--------------UGGGGGuC- -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 151029 | 0.66 | 0.614155 |
Target: 5'- -cCCCGC-CCgaccCCCGCCcgACCCCCGc -3' miRNA: 3'- gaGGGUGaGGac--GGGUGG--UGGGGGUc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 25682 | 0.66 | 0.614155 |
Target: 5'- -aCCgGCUCUgcggGCCCGCCacgGCCgCCUGGg -3' miRNA: 3'- gaGGgUGAGGa---CGGGUGG---UGG-GGGUC- -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 71999 | 0.66 | 0.614155 |
Target: 5'- --gCCACgugcaaCgCUGCCUACCugCCCCGc -3' miRNA: 3'- gagGGUGa-----G-GACGGGUGGugGGGGUc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 91888 | 0.66 | 0.614155 |
Target: 5'- -aCCCAgCUCUgGgCCGCCAUCCgCAGg -3' miRNA: 3'- gaGGGU-GAGGaCgGGUGGUGGGgGUC- -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 147334 | 0.66 | 0.614155 |
Target: 5'- uUCCCuuCUCCUcgucuucccccGuCCCGCCGCgCCCCu- -3' miRNA: 3'- gAGGGu-GAGGA-----------C-GGGUGGUG-GGGGuc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 150996 | 0.66 | 0.614155 |
Target: 5'- -cCCCGC-CCgaccCCCGCCcgACCCCCGc -3' miRNA: 3'- gaGGGUGaGGac--GGGUGG--UGGGGGUc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 151095 | 0.66 | 0.614155 |
Target: 5'- -cCCCGC-CCgcccCCCGCCcgACCCCCGc -3' miRNA: 3'- gaGGGUGaGGac--GGGUGG--UGGGGGUc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 151062 | 0.66 | 0.614155 |
Target: 5'- -cCCCGC-CCgaccCCCGCCcgACCCCCGc -3' miRNA: 3'- gaGGGUGaGGac--GGGUGG--UGGGGGUc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 102900 | 0.66 | 0.604359 |
Target: 5'- aUCCCGg-CCUG-CCGCCGCCgCUCGGc -3' miRNA: 3'- gAGGGUgaGGACgGGUGGUGG-GGGUC- -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 57834 | 0.66 | 0.604359 |
Target: 5'- cCUCCCAaccuaacacCCUaacagugauggGCCCGCCugCCCCc- -3' miRNA: 3'- -GAGGGUga-------GGA-----------CGGGUGGugGGGGuc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 31953 | 0.66 | 0.604359 |
Target: 5'- -cCCCGCgCUcGCCCcUCGcCCCCCAGg -3' miRNA: 3'- gaGGGUGaGGaCGGGuGGU-GGGGGUC- -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 134380 | 0.66 | 0.604359 |
Target: 5'- --gCCGCUCCUcGCgCCGCC-CUCCUGGa -3' miRNA: 3'- gagGGUGAGGA-CG-GGUGGuGGGGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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