Results 41 - 60 of 174 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5108 | 5' | -56.2 | NC_001798.1 | + | 36490 | 0.7 | 0.690986 |
Target: 5'- gGGCGCCgGCGCG----ACGCGGGCGGc -3' miRNA: 3'- -CCGCGG-CGCGUcuugUGUGUCUGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 149982 | 0.7 | 0.690986 |
Target: 5'- gGGCGCgGCGCccgcGGACGCcgGGGCGAGc -3' miRNA: 3'- -CCGCGgCGCGu---CUUGUGugUCUGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 55979 | 0.7 | 0.690986 |
Target: 5'- cGCGCCGgGgAGGcCGCGgGGGCGAGg -3' miRNA: 3'- cCGCGGCgCgUCUuGUGUgUCUGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 29403 | 0.7 | 0.690986 |
Target: 5'- cGCGCCG-GCGGGGCGC-CGGGgGGAc -3' miRNA: 3'- cCGCGGCgCGUCUUGUGuGUCUgCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 153032 | 0.7 | 0.680825 |
Target: 5'- gGGC-CCGCGCGGcGGCGCGCGGuuGGc -3' miRNA: 3'- -CCGcGGCGCGUC-UUGUGUGUCugCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 77787 | 0.7 | 0.680825 |
Target: 5'- uGCGCCGCcuGCAGGcGCugGCGGGCa-- -3' miRNA: 3'- cCGCGGCG--CGUCU-UGugUGUCUGcuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 22874 | 0.7 | 0.701097 |
Target: 5'- -cCGCCGCGCggcccggguucGGGugGCACGGugGGc -3' miRNA: 3'- ccGCGGCGCG-----------UCUugUGUGUCugCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 3410 | 0.7 | 0.705125 |
Target: 5'- aGCGCCGCGUucucgcgcgccagcaGGGGCGCGUAGGCGc- -3' miRNA: 3'- cCGCGGCGCG---------------UCUUGUGUGUCUGCuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 153652 | 0.7 | 0.679807 |
Target: 5'- aGGCGuaccuucCCGCGCGGcGCGucCGCGGGCGGGg -3' miRNA: 3'- -CCGC-------GGCGCGUCuUGU--GUGUCUGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 36528 | 0.7 | 0.660392 |
Target: 5'- cGGCgGCCGgGCgGGGGCGCGCGG-CGGc -3' miRNA: 3'- -CCG-CGGCgCG-UCUUGUGUGUCuGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 56790 | 0.7 | 0.670624 |
Target: 5'- uGGcCGCCGacggcCGCGGAGguCACGGugGAGa -3' miRNA: 3'- -CC-GCGGC-----GCGUCUUguGUGUCugCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 36570 | 0.7 | 0.660392 |
Target: 5'- cGGCgGCCGgGCgGGGGCGCGCGG-CGGc -3' miRNA: 3'- -CCG-CGGCgCG-UCUUGUGUGUCuGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 4214 | 0.7 | 0.660392 |
Target: 5'- cGGCGCUG-GCGGGG-GCGCGGGCGGc -3' miRNA: 3'- -CCGCGGCgCGUCUUgUGUGUCUGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 36612 | 0.7 | 0.660392 |
Target: 5'- cGGCgGCCGgGCgGGGGCGCGCGG-CGGc -3' miRNA: 3'- -CCG-CGGCgCG-UCUUGUGUGUCuGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 134312 | 0.7 | 0.711149 |
Target: 5'- uGCGCCuGgGCuGGGACcCGCAGACGGGu -3' miRNA: 3'- cCGCGG-CgCG-UCUUGuGUGUCUGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 85197 | 0.7 | 0.711149 |
Target: 5'- cGUGCCGCcCGcGAGCGCGCucGACGAGg -3' miRNA: 3'- cCGCGGCGcGU-CUUGUGUGu-CUGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 53252 | 0.7 | 0.711149 |
Target: 5'- gGGCGUCcUGCGGcAGCGCGCcGACGAc -3' miRNA: 3'- -CCGCGGcGCGUC-UUGUGUGuCUGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 135502 | 0.7 | 0.670624 |
Target: 5'- cGGaCGCCGCGCAcGGCGCGauccaGGACGc- -3' miRNA: 3'- -CC-GCGGCGCGUcUUGUGUg----UCUGCuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 64900 | 0.69 | 0.769717 |
Target: 5'- cGCGCCcCGC-GAACGCACAGcGCGu- -3' miRNA: 3'- cCGCGGcGCGuCUUGUGUGUC-UGCuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 1376 | 0.69 | 0.769717 |
Target: 5'- cGGCGUCGCGCcccAGcgcCACGUAGACGGg -3' miRNA: 3'- -CCGCGGCGCG---UCuu-GUGUGUCUGCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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