miRNA display CGI


Results 21 - 40 of 174 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5108 5' -56.2 NC_001798.1 + 141480 0.7 0.698069
Target:  5'- cGGCucGCCGCGCGGGggGCugAuguccguggcccugCAGACGGAc -3'
miRNA:   3'- -CCG--CGGCGCGUCU--UGugU--------------GUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 139712 0.66 0.88177
Target:  5'- gGGCGCCaccgaaucgcgGCGCAGAACAuguacguuaagcucuCGgGGGCGu- -3'
miRNA:   3'- -CCGCGG-----------CGCGUCUUGU---------------GUgUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 139435 0.66 0.899336
Target:  5'- -cCGCCGUGCGGuu--CAgGGACGAGg -3'
miRNA:   3'- ccGCGGCGCGUCuuguGUgUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 135738 0.69 0.750589
Target:  5'- aGGUuaUGCGCGacGCGCugAGACGAAu -3'
miRNA:   3'- -CCGcgGCGCGUcuUGUGugUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 135502 0.7 0.670624
Target:  5'- cGGaCGCCGCGCAcGGCGCGauccaGGACGc- -3'
miRNA:   3'- -CC-GCGGCGCGUcUUGUGUg----UCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 134312 0.7 0.711149
Target:  5'- uGCGCCuGgGCuGGGACcCGCAGACGGGu -3'
miRNA:   3'- cCGCGG-CgCG-UCUUGuGUGUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 134243 0.67 0.856535
Target:  5'- gGGCGCUguaugcguGCGUucuggcggcccuGGAGCGC-CAGACGGg -3'
miRNA:   3'- -CCGCGG--------CGCG------------UCUUGUGuGUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 133672 0.71 0.639867
Target:  5'- aGCGCC-UGCcGGACGCACAGACa-- -3'
miRNA:   3'- cCGCGGcGCGuCUUGUGUGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 133565 0.69 0.740863
Target:  5'- gGGUGCaGCugGCcaAGAGCACGCAGACGu- -3'
miRNA:   3'- -CCGCGgCG--CG--UCUUGUGUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 132671 0.66 0.892763
Target:  5'- gGGCGCUGCgacGCGucGCACGCcGACGc- -3'
miRNA:   3'- -CCGCGGCG---CGUcuUGUGUGuCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 130418 0.66 0.905674
Target:  5'- cGGCGacgaGCGcCAGGGCgACGCGGACu-- -3'
miRNA:   3'- -CCGCgg--CGC-GUCUUG-UGUGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 129294 0.69 0.769717
Target:  5'- aGGCaCCGCGCGG---GCGCGGAgGAGg -3'
miRNA:   3'- -CCGcGGCGCGUCuugUGUGUCUgCUU- -5'
5108 5' -56.2 NC_001798.1 + 128585 0.68 0.806416
Target:  5'- uGgGCCGCGCGGA---CGCGGGCGu- -3'
miRNA:   3'- cCgCGGCGCGUCUuguGUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 126032 0.67 0.823845
Target:  5'- cGCGCUuagcgaGCGCcuGGACGCGgCGGACGAu -3'
miRNA:   3'- cCGCGG------CGCGu-CUUGUGU-GUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 121543 0.68 0.796554
Target:  5'- cGGCGCUGCGCcuggcguGGGGCcCGUGGGCGAc -3'
miRNA:   3'- -CCGCGGCGCG-------UCUUGuGUGUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 121455 0.66 0.905674
Target:  5'- -cUGCCGCGCGuccccaGCGCGGGCGGg -3'
miRNA:   3'- ccGCGGCGCGUcuug--UGUGUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 120407 0.67 0.864213
Target:  5'- gGGgGCCGauccCGU-GAGCGCGCGGAgGAAa -3'
miRNA:   3'- -CCgCGGC----GCGuCUUGUGUGUCUgCUU- -5'
5108 5' -56.2 NC_001798.1 + 120370 0.69 0.740863
Target:  5'- gGGCgagGCUGUGCAcGACGCAgCGGGCGAu -3'
miRNA:   3'- -CCG---CGGCGCGUcUUGUGU-GUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 119232 0.72 0.588584
Target:  5'- cGGCuGCuCGCGCuGAGCGCccaGGACGGAu -3'
miRNA:   3'- -CCG-CG-GCGCGuCUUGUGug-UCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 117577 0.66 0.871681
Target:  5'- cGCGCCG-GCAuGGAC-CACGGGCa-- -3'
miRNA:   3'- cCGCGGCgCGU-CUUGuGUGUCUGcuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.